Arabidopsis lyrata (lyrate rockcress): 9324816
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Entry
9324816 CDS
T01578
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4
KO
K11644
paired amphipathic helix protein Sin3a
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9324816
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
9324816
REST complex
9324816
Heterochromatin formation proteins
Other heterochromatin formation proteins
9324816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
9324816
NCBI-ProteinID:
XP_020890345
LinkDB
All DBs
Position
Unknown
AA seq
1337 aa
AA seq
DB search
MVGGSSVQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL
FKGNRELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVY
KSFLDILNMYRKENKSITEVYQEVAILFRDHHDLLVEFTHFLPDTSATASTNDSLKMPVR
DRGIKSLPNMRQIDLDKKDRIITSLPDRALKTEHMDVDHERSLLKDSKEDVRRIDKKNDY
MDDRDRKDYRGLEHDSHKEHFFNNKKKLILKDDDSAEMSNQAREGDKFYGAIPSSSTYDE
KGHSQELAFVDRVKAKLDTAENQEFLRCLNLYSKEIISQPELQSLVSDLIGVYPDLMDAF
RVFLAQCDKNDGLLSGIVSKKSLWSEGKCPQPTKSQDKDTDREREKIERYRERDREKERL
EKAAASQKWAKPISELDLSNCEQCTPSYRRLPKNYPIPIASQKMEIGSQVLNDHWVSVTS
GSEDYSFKHMRKNQYEESLFKCEDDRFELDMLLESVISATNRVEELLAKINSNELKTDTP
ICIEDHLTALNLRCIERLYGDHGLDVLDLLKKNAYLALPVILTRLKQKQEEWARCRTEFN
KVWADIYTKNYHRSLDHRSFYFKQQDSKNLSTKALLAEIKEISEKKRGEDDALLALAAGN
RRTISSNMSFDYPDPDLHEDLYQLIKYSCGEMCSTEQLDKVMKVWTEFLEPIFGVPSRPQ
GAEDREDAVKSTNQDREDAVSPQNGASIANSMRSNGPRKGNENNQVRQASELDKDVTSSK
TSDVLLSCDNNTQNDKMPKNLTTPDERPETKQAVSIECAHNSNALPVDGLLPQRNGKISN
LSIAGLSNSNPKPSALTSGTEELKPNHVNGPRVEIGDNRVIPNGTLAETSNKQTSNEGFA
GETKVEREEGELSPTGEFEEDNFAVHGENDMEALSKSKENDATADDEGDASAPRSSDGSG
NTSQNGDVSGTDSGDGEDCYREDDLDHNKAESEGEAEEGMSDAHDDTEGDRPVLSISVKN
LLHVKPLAKYVPPALRDKDKDDSRKNSQVFYGNDSFYVLFRLHQILYDRILSAKVNSSSP
DRKWKTSNPTNPADSYARFMDALYSLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYK
LIKHLQGVAADEMYNKLQQLYAYEKSRKPEKFLDAVYYENARVLLPDEDIYRIECELSTP
SKLSIQLLDYGHDKPDVTSISMDPTFAAYLHNVFLSYPPNAKENPRIYLKRNKRKNGGDD
ELCTTDGVKIINGLECKITCSSSKVSYVLDTEDVLHRSKRRKFLNQSGLPLRQDSVCSGS
LIRQRRIQRYQKLLTGQ
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggttggaggaagtagtgtgcagaagctaactactaatgatgcacttgcgtatctcaag
gctgtcaaagataaatttcaagataaacgtgataaatacgatgagtttcttgaggttatg
aaagattttaaagctcagagagttgatactactggtgttatcttaagggtgaaagaactc
ttcaaagggaacagggaactgattttggggttcaatactttcttgccaaagggtttcgag
ataactctccgacccgaggatgaccaacctgctgcgccaaagaagcctgttgagtttgag
gaagctattagttttgtcaacaagattaagacaaggtttcaaggcgatgatcgtgtatac
aaatcgtttttagacattttgaacatgtatagaaaggaaaacaagtccattactgaggtt
taccaagaggtggctatccttttccgggaccatcacgatttgcttgtggaattcactcac
tttctccctgatacttcagcaactgcgtctactaatgattctctaaaaatgccagtacgt
gatagaggcattaagtctcttcccaacatgcgtcaaatagatcttgataagaaggaccgg
attattacttcgcttcctgaccgtgccctcaaaaccgaacatatggacgtagaccatgag
agatctttgttgaaagatagtaaagaagatgtgagacgcattgacaaaaagaatgattac
atggatgacagagataggaaagattacagaggtcttgaacatgatagccataaagagcat
ttcttcaacaacaaaaagaaattgatactaaaggatgatgattctgctgaaatgtcaaat
caagctagggaaggagacaagttttatggagccattcccagttcatctacttatgatgaa
aaaggtcatagccaagaacttgcttttgttgatagagtgaaggcaaagcttgataccgcg
gaaaaccaggagttcttacgatgtcttaatctctattcaaaggagataatcagccaaccg
gaattgcaatctttggtgagcgatttaattggagtatatccagaccttatggacgccttc
agagtctttttggctcagtgtgacaagaatgatggattactctctggtatcgtttctaag
aaatccttgtggagcgaaggcaaatgtcctcaacctactaagtcacaggacaaagataca
gaccgagaacgtgagaagattgaaaggtatagagaaagagaccgcgagaaggagaggctt
gaaaaggcggcagcgagtcagaaatgggctaaacctatcagtgagctagatctctcgaac
tgtgaacagtgcacacctagttatcggcgacttccaaagaattatccaattcctatagca
agccaaaaaatggagattggtagccaagtgcttaatgatcattgggtctccgtcacctca
ggaagcgaagattattcatttaaacacatgcgtaagaaccagtatgaagagagcctattc
aaatgtgaagatgacaggtttgagctagacatgttattagagtctgtgatctctgctacg
aatagagtggaagagttattggcaaagattaacagtaatgaattgaaaaccgacactccc
atctgcatcgaggatcacctcacagctctaaacctaagatgcatagaacggttatatggt
gaccacgggctcgatgtgttggatttgttaaagaagaatgcatatcttgctttaccagta
atactaacccgtttgaaacaaaagcaagaagagtgggcaaggtgtcgtactgagtttaac
aaagtatgggctgacatatatacaaagaactaccacagatcgcttgatcatcgcagtttt
tatttcaaacagcaggattcaaagaatctgagtacaaaagcattgctggcagagataaaa
gagatctctgaaaagaagcgaggcgaagatgatgcacttcttgctcttgcggctggaaat
agacgaaccatttcttccaatatgagttttgattatccggatcctgatcttcacgaagat
ttgtatcagctgatcaagtattcatgtggagaaatgtgttcaacagaacagttagataag
gtaatgaaggtatggacagaatttttggaaccaatatttggtgttccttctcgccctcaa
ggtgccgaagaccgagaagatgctgtcaagtctacgaaccaagaccgagaagatgctgtc
agtcctcaaaatggagctagtattgccaactctatgcgttcaaatggccctcgaaaagga
aatgaaaataatcaagtgcggcaagctagtgagttggataaagatgtcacttctagtaaa
acctcagatgtcttattatcatgtgacaacaacactcagaatgataaaatgccgaagaat
ctgaccacacctgacgaaagaccggaaaccaaacaagctgtttctattgaatgtgcccac
aactcaaatgcactgcctgtggatggattgttacctcaaaggaatggaaaaatcagcaat
ttatccattgccgggcttagcaatagcaatccaaaacctagtgcattaaccagtggaacg
gaggagttgaagccaaatcacgtaaatgggccacgcgtagagattggcgacaaccgagta
attccaaatgggacattggcagaaacatcgaataagcaaacatctaacgaagggttcgct
ggggaaaccaaagtcgaaagagaggagggtgaactttctccaacaggagagtttgaggaa
gataattttgcagttcatggagagaatgacatggaggctctcagcaaaagtaaggagaat
gatgctactgcagatgatgaaggtgatgcaagtgctccaagatcatcagatggcagtgga
aacacatctcagaacggtgatgtttctggaactgactctggtgatggtgaagattgttat
cgcgaagatgatttggaccataataaggcagaaagcgaaggtgaggctgaagaaggtatg
tcggatgcccatgatgatactgaaggagataggcctgtgttgtccatttcagtaaaaaac
ctgctacatgtgaaacctcttgcaaagtatgttcctccagctttgcgcgataaggacaaa
gatgattctcggaagaactctcaagtcttttatgggaatgattctttctatgttcttttc
aggcttcatcagattttgtatgacagaatattatcagcaaaagtcaattcatcatctcca
gatagaaagtggaagacctcaaatccaacaaaccccgctgattcgtatgccagatttatg
gatgctctctacagtttgctcgatggtacatccgataattcgaagtttgaagatgactgc
cgagcaattattgggacccagtcatatgtgctcttcacattagacaaactgatctataag
ctcatcaagcatctccaaggtgtagcagctgatgagatgtacaacaaattacaacagtta
tatgcttatgagaaatctagaaagcctgaaaagtttctcgatgctgtttattacgaaaat
gctcgtgtgcttcttcccgatgaggatatataccgcattgaatgtgaactatctacacca
agcaaactctctattcagcttctggactatggacatgataagcctgatgtgacatccata
tccatggacccaacttttgcagcttacctccacaatgtattcctttcctatccacctaat
gcgaaagagaatccccgaatctatttgaaacggaataagcgtaaaaatggtggtgacgat
gaactctgcaccacagatggagttaagattattaacggtttggaatgtaagataacctgc
agttcttcaaaggtctcctatgtattagacacagaggatgtgttacatcgttctaagagg
aggaaatttttgaaccaaagcggtttaccactcagacaggattctgtttgcagtggttct
ttaatcaggcaaaggagaatacaaagataccaaaaacttctcactggccaataa
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