Arabidopsis lyrata (lyrate rockcress): 9324922
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Entry
9324922 CDS
T01578
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aly03016
]
9324922
Enzymes [BR:
aly01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
9324922
Transfer RNA biogenesis [BR:
aly03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
9324922
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
TraT
FAM219A
Motif
Other DBs
NCBI-GeneID:
9324922
NCBI-ProteinID:
XP_002887411
UniProt:
D7KZ94
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MEDIEDLLAGGVGGAPPGFRLPLNAVGINPKTNKSKRVSSKQDQITASNRDSLAPPSLKI
PGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSAMS
TLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLLT
RKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTVIS
EGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLKEI
AAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDIICG
FPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRDLTSVFE
AFAPYTGMEGREERIWITEIATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVGRW
SVFGEVIETFSSANRETKSREETKPPCSSNVSSCETCTCSAESCGEERSGEACNISGNIS
RQDDQKGKSEKQETEMREVVVPGSSVANWGFIDKALVCGVFVSSLTILVLLISIASRVLV
RQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatcgaggatttgttggccggaggagtcggtggtgcaccaccgggattccga
ttaccgttgaatgcggttgggataaatccgaagacgaataagagcaaacgtgttagctcg
aaacaggatcaaattactgcttcgaatcgtgactcgcttgctccaccatcgttgaagatt
ccaggaactcagacgatatacatcaagacgtttggatgttctcataatcagagtgatagt
gagtatatggctggtcagcttactgcattcggctatgcgttgacagaagtcccggaggat
gctgatttatggctcattaacacctgtactgtgaaatctcctagtcagtctgcaatgtct
actttgataacgaggggtagaagtgggaaaaagcctcttgtgattgcgggatgtgttcct
cagggcagtcgtgatcttaaagaactagaaggcgttagtgtagttggagttcaacagatt
gatcgtgttgttgagatcgttgaagaaactcttaagggtcatgaagtgcggcttctgact
cggaagactttgcctgcgcttgatctcccaaaggtgcggaggaacaattttatcgaaatt
ctccccattaatgttggctgtttgggtgcctgtacttactgcaagaccaagcacgcccgt
ggtcacttaggaagctacacagtcgatagtcttgtggagcgggtgcgaactgtaatatct
gaaggagtcaaggagatttggttgagcagtgaggacactggggcatatggtcgtgacata
ggagttaatcttccaatcctgcttaatgctatcgttaaggagcttccttctgatcaaagc
acaatgctaaggattgggatgactaatcctccctttattctagagcatttgaaagaaata
gcagcagtgttacgtcacccatgtgtctacacctttcttcatgtccctgtgcaatctggc
agtgattctgtgttgacggccatgaacagggaatatacagcaagtgagttcaggactgtg
gtagacaccttgacagagcttgtgccaggaatgcaaattgctactgatataatatgtggt
tttcctggtgaaaccgatgaagatttttctcaaacagttgaacttatcaaggattacaag
ttttctcaagttcatatttctcagttttaccccagaccagggaccccagcagcaaagatg
aagaaggtacaaagtaaaatagtgaagcaacgaagccgtgacttgacttctgtctttgag
gcttttgcaccttacaccgggatggagggcagagaagagaggatatggataaccgaaata
gcaactgatggaattcatttggttggacatacgaagggatatgtacaggtcttagttact
ggaccagaaagtatgcttgggacttcagctatggcgaggataacatctgtggggagatgg
tcagtgtttggggaagtgattgagacatttagctctgcaaatagagaaacaaaatcccga
gaagaaacaaagccgccttgttcgtcgaatgttagttcttgtgagacttgcacttgctct
gctgagagctgtggggaagagagatcaggagaggcgtgtaacatttctggaaatatctca
agacaagatgatcaaaagggaaagtcagagaaacaagagacggagatgcgagaggtcgtc
gtaccgggaagcagcgtagcaaattggggtttcattgataaggcactagtgtgtggagtg
ttcgtaagctctctcaccattctagttttgttgattagtatagcatctagagttttggtg
cgccaatga
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