Arabidopsis lyrata (lyrate rockcress): 9325123
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Entry
9325123 CDS
T01578
Name
(RefSeq) tRNA pseudouridine synthase A, mitochondrial isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aly03016
]
9325123
Enzymes [BR:
aly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
9325123
Transfer RNA biogenesis [BR:
aly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
9325123
Prokaryotic type
9325123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-GeneID:
9325123
NCBI-ProteinID:
XP_020890735
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MLTTTTDEETDMSCGGGVTEPQKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGA
VPESIRGKPKLYDFARSARTDKGVSAVGQVVSGRFNVDPPGFVDRLNSNLPNQIRIFGYK
HVTPSFSSKKFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKI
PGLVGNWKGTNFVTKSLDFQSDILSNNSSALRTDVKIEALSSNLASLSSVDVEVGSIQED
SCKLNTNSTEKINGEGNVMAETKSKFCYGEKEKERFNRILSCYVGSYNFHNFTTRTKADD
PAANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQT
AFSKDVNITVPMAPEVGLYLDECFFTSYNKKFEDSHEEVSMEAYKEEAEAFKLKHIYSHI
CATERKYGNMALWLHSLNYRNYPDLNFGSHGHNNRVQISCSEES
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaccaccaccgatgaggaaacagacatgtcctgcggcggaggtgtcacggag
cctcaaaaagttgccataatcttcgcgttttgcggtgtaggataccaagggatgcaaaag
aatcccggcgcgaaaaccattgaaggtgagctagaagaagctttgttccatgccggagct
gtaccagagtccattagaggcaagccaaaactatacgatttcgcacgatcggcacggacg
gataaaggagttagtgctgtgggacaagtagtttccggtcgattcaacgttgatccacct
ggattcgtggatcgtctcaattcaaatctccctaatcagattaggatcttcgggtataag
catgttacgccgtcgtttagctccaaaaagttctgcgatcgaagaaggtatgtgtatctg
cttccagtgtttgctcttgatccaatctcgcatcgtgatagagaaacagtaatggctagt
ttgggtccaggagaggaatatgttaagtgttttgagtgctcagagagaggtcgtaagatt
ccaggtcttgtgggtaattggaaaggtaccaactttgttactaaatcattggattttcag
tcagacattttgtcgaacaactctagtgcattaagaactgatgtcaagattgaagctttg
agttctaatttagctagcttaagctcagtagatgttgaagtaggtagtatacaagaagac
agttgtaaattgaatacaaattcaacagagaagatcaatggagaaggaaatgtgatggct
gagacaaagagcaagttttgttatggtgaaaaggaaaaggaaaggttcaatagaatacta
agttgttatgttggatcatataatttccataacttcactacaagaacaaaagcagatgat
ccggctgcgaatcgtcaaatcatctccttcactgctaatactgttattaatcttgatgga
attgactttattaagtgtgaagtcttaggcaaaagctttatgcttcatcagattcgaaag
atgatgggtcttgctgttgcaatcatgaggaattgtgcttctgaatcacttatccagact
gctttcagcaaggatgtgaatattactgtaccaatggcacctgaagttggactctacctc
gacgaatgcttcttcacgtcttataacaaaaaatttgaagacagtcatgaagaagtgtcc
atggaagcatacaaagaagaagctgaagcattcaaattgaagcatatttattctcatatc
tgcgccacagagcgaaaatatggaaatatggctctttggttacattccttgaactataga
aactatccagacctaaattttggcagtcatggacataataacagagtccaaatttcttgt
tcagaagaaagttga
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