Arabidopsis lyrata (lyrate rockcress): 9325454
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Entry
9325454 CDS
T01578
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9325454
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
9325454
microRNA pathway
RISC loading complex
9325454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_PBD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
9325454
NCBI-ProteinID:
XP_020866655
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MVMEPREDIIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDDNGVINDFFGGIDH
ILDSIKNGGGLPNNGVSDTNEVSVTPQVIAKEVTVSVKENGLQKNGGTRDELSKEEGGKD
RKRARVCSYQSERSNLSGRGQVNSRERDRFMNRKRTRNWDEAGNNKKRECYNYRRDGRDR
EGRGYWERDKVGSNELVFRSGTWEADHERGVKKESGRNRECDVKVEENKSKPEERKEKVV
EEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSKNRKLLSVFLVPK
VPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHS
IIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQV
DCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIVAV
EEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELG
QWCAYKVGQSFLTALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVSK
TENGNANDEMEEGELPDDHVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTSDF
RAIVFVERVVAALVLPKVFAELPSLGFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVT
LLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAF
LRNARNSEETLRKEAIERTDLSHLKDTSRLISIDTVPGTIYKVEATGAMVSLNSAVGLVH
FYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQ
AVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKVDQDDEGEPVPGTARHREFYPEGVADVL
KGEWILSGKEICESSKLFHLYMYSVRCVDLGSSKDPFLTEVSEFAILFGNELDAEVLSMS
MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAY
LFVPVSDNTSIEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGF
GKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGC
MVAEDLVGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGV
DLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETILDKTYYVFLPPELCVVHPLSGSLVR
GAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYL
KWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG
VPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADV
VEALIGVYYVEGGKVAANHLMKWIGIHVEDDPDEVEGTVKNVNVPESVLKSIDFVGLERA
LKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLT
DLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDC
KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ
AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEK
RVNGNAVENQDDENGNANKKNGNQTFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFT
FGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLQLLNKTYS
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggtaatggagcctagggaagacataataaagccttcttattggctagatgcttgcgag
gacatctcttgtgatcttattgatgatctcgtgtctgaatttgatccttcctctgttgct
gtcaatgaatccactgatgataacggcgtcatcaatgattttttcggtgggattgatcac
attttagatagtattaagaacggtggaggtttaccaaacaatggcgtttctgataccaac
gaggttagtgtaactcctcaggttattgctaaggaggttacagtctcggtgaaggagaat
gggttgcaaaagaatggcggtacgagagacgaattgtcgaaagaggaaggagggaaggat
aggaagagagctagggtttgtagttatcagagtgaaaggagtaacctttcaggtagagga
caggttaattctagggagagagataggtttatgaataggaaacgtactcgtaattgggac
gaggcgggtaacaataagaaaagggaatgttacaattacagaagagatggtagagataga
gaaggtaggggttattgggagagggataaagttggttccaatgagttggtttttcggtca
gggacttgggaagctgatcacgaaagaggtgttaagaaagagagtggtcgaaaccgtgaa
tgtgatgtgaaggttgaggagaataagagtaagcctgaagaacgtaaagagaaggttgtg
gaagagcaagctaggagataccaattggatgtgcttgaacaagctaaagcgaaaaacacg
attgcttttcttgagaccggtgctggaaagacacttatcgcgattcttcttattaaaagt
gttcataaggatttgatgagcaagaacagaaaactgctctcggtgttcttggttcctaaa
gtgcctttggtttatcagcaagcagaagtgatccgtaatcaaacttgttttcaagttggg
cattactgtggtgagatgggacaggacttttgggatgctcgaaggtggcaacgagagttt
gagtctaagcaggttctagtaatgacagcacaaattctgttgaatatactgagacacagt
atcattagaatggaaacaattgatcttcttattctcgatgaatgtcaccacgctgtcaag
aaacatccatactctttagtgatgtcagagttttaccatacaactcctaaagataaaaga
cctgccatctttggaatgactgcttcgcccgttaatctaaagggtgtttcaagccaagta
gattgtgcgataaaaatacgcaaccttgagaccaagttggattctacggtttgtacaata
aaagatcgaaaagaattagagaaacatgtgcctatgccttcagagatagtcgtcgagtat
gacaaagctgctactatgtggtctcttcatgagacaataaagcaaatgattgtagctgtt
gaagaagcggcacaagcaagttcaaggaaaagcaagtggcaatttatgggggctagggat
gctggagcaaaggatgaactgagacaggtttatggcgtctctgaaagaacggagagcgat
ggagccgccaatttgattcataaacttagagctattaattatactcttgctgaattgggt
caatggtgtgcttacaaggtggggcaatcgtttttgactgctttgcaaagtgatgagagg
gtgaatttccaagtcgacgtgaagtttcaagaatcatacctcagtgaggtggtgtcacta
ttgcaatgtgagcttctggaaggcgctgctgctgaaaaggtcgcagcggaagttagcaaa
acagaaaatggtaatgcaaatgacgagatggaggagggagagctccctgatgatcatgtg
gtctcgggaggggaacacgttgatgaagtaataggtgccgcagtggctgatgggaaagtt
actccaaaagttcaatcattgatcaaactactcctcaagtatcagcacacatctgatttt
cgagctattgtttttgttgagagggtggttgctgctttggttcttcctaaggtttttgcc
gagctgccttcgcttggttttatacggtgtgccagcatgattggacacaataacagccag
gaaatgaaatcttctcaaatgcaagatacaatttccaaattccgagatgggcatgtgaca
ctgcttgttgccacaagcgttgctgaggaaggacttgatattaggcaatgtaacgttgtt
atgcgcttcgaccttgcaaagacggtgctggcatatattcagtctcgtggtcgggcaaga
aagcctggatcagactacatactcatggttgagaggggaaatgtatctcacgcagcgttc
cttaggaatgctcggaacagtgaggagacgcttcgaaaagaagcaattgaaaggactgat
cttagtcatctcaaagatacatcgagattaatctccattgatactgtgccaggtacaatt
tataaggtggaggcaactggtgccatggttagcttgaattccgcggttggtcttgtacat
ttctactgctctcagcttcctggtgacaggtatgcaatccttcgtcctgagtttagcatg
gagaagcatgaaaagcctgggggccacacagagtattcatgtaggcttcagcttccttgc
aatgcaccatttgaaatactcgagggtcctgtttgcagttcaatgcgtcttgcacaacag
gctgtatgtctagctgcttgcaagaaactgcatgagatgggtgcatttaccgatatgcta
ttaccggacaagggaagtggtcaagacgctgagaaggttgaccaagatgatgaaggtgag
cctgttcctggaactgctagacatagagagttctatcctgaaggtgtggcggatgtactg
aagggagaatggattctatctggaaaggaaatatgtgagagctcaaagctattccattta
tacatgtatagtgtcagatgtgtagatttaggctcttcaaaagatccattcctaaccgaa
gtttcagagttcgcgattctttttggcaatgagctggatgcagaggtattatcgatgtct
atggatctttatgttgctcgggccatgatcactaaagcatctcttgctttcaagggatca
cttgatattacagaaaaccagctatcatctctaaaaaagtttcatgtgagattaatgagt
atcgtgttggatgttgatgttgaaccctctacgacaccatgggatcctgcaaaggcctac
ttgtttgtccctgtttctgacaatacgtcaattgaacccataaaagggatcaactgggaa
ttggttgaaaagattacgaaaaccactgcgtgggacaaccctcttcagagagctcgtccc
gatgtatatctcgggactaatgagagaactcttggtggggacagaagggaatatgggttt
ggtaaacttcgtcacaacattgtctttgggcagaaatctcacccaacttatggtattaga
ggagctgttgcatctttcgatgttgtgagagcttctggattgttacccgtaagagatgcg
tttgagaaggaagtagaagaggatctatcaaaaggaaaattgatgatggctgatgggtgc
atggttgcagaagatcttgttgggaaaatagtgacagccgcacattccgggaagcggttt
tacgtagattcaatttgttatgatatgagtgcagaaacatcattcccaaggaaagaggga
tatcttggtcccctagagtacaacacgtatgctgactattacaagcaaaagtatggagtt
gatttgaactgtaagcaacaacctttgatcaaaggacggggtgtttcgtattgcaagaac
cttctttctcctaggtttgaacagtcaggtgaatctgagacaatccttgataaaacatat
tacgtgtttcttccacctgaactatgcgttgtccatccactttcgggttcacttgtccga
ggtgctcagaggttaccctctataatgagaagagttgagagcatgttgctcgctgttcaa
ctcaaaaatttgattagttatcctattcctacatctaagattcttgaagccttgactgcc
gcctcgtgccaggaaacgttctgctacgagagagctgagcttttaggagatgcttatcta
aaatgggtcgttagtcgttatctgtttctgaagtatccgcaaaagcacgagggtcagctt
acaaggatgaggcaacaaatggttagtaacatggttctttatcagtttgctctggttaaa
gggcttcagtcatatatccaggcggatcgtttcgccccgtctaggtggtctgctcctggt
gtgcctccggttttcgacgaggacacaaaagatggaggatcttcgtttttcgatgaagag
caaaaacctgtttccgaggaaaacagcgatgtgtttgaagatggggagatggaagatggt
gaactagagggcgatttgagttcttaccgagttttatctagcaaaacgttagctgatgtt
gttgaagctttgattggtgtttattacgtcgaagggggtaaggttgcagcaaatcatttg
atgaaatggattgggattcatgtggaagatgatcctgatgaagtcgaaggaacggtgaaa
aatgtaaatgttccagagagtgtgctaaagagtattgactttgttggtcttgagagagct
cttaaatttgagtttaaagagaaaggtcttcttgttgaagctataacacatgcttcaaga
ccatcttcaggtgtttcgtgttaccaaagattggaatttgttggtgatgcggtcttggat
catcttatcacaagacacctgtttttcacatacacaagccttcctcctggtcggttaact
gatcttcgagctgcagcggttaacaacgagaattttgctcgcgttgcagttaaacataaa
ctccacttataccttcgtcacggttctagtgccctcgagaaacagattcgggaatttgtg
aaggaagttcaaaccgagtcatcgaaaccggggttcaactcttttggtttgggagactgt
aaagcaccaaaagttcttggagatattgttgaatctattgcaggtgctatttttcttgat
agtggaaaagatacaactgctgcttggaaggtttttcaacctttgcttcagcccatggtg
acaccagagacacttccaatgcatccggttcgagagctacaagagcggtgccagcaacaa
gcagaagggttagaatacaaagcgagtagaagtggtaacacagcgactgtggaagttttc
atcgatggtgttcaagtcggagtggcacaaaacccgcagaagaaaatggctcaaaagcta
gcggctaggaacgcgctcgcagctttgaaagagaaagaaatagcagaatcaaaggagaag
cgcgtgaacgggaatgcggtagagaatcaagacgatgagaatgggaacgcgaacaagaag
aatggaaatcagacgttcacgagacaaacgttgaatgatatttgcttgaggaagaattgg
ccaatgccttcttacagatgtgtgaaagaaggaggaccggctcacgcaaagaggtttacg
tttggggttagagttaatacgagcgatagaggatggaccgatgagtgtattggcgagcca
atgccgagtgttaagaaagctaaggattcagctgcagttcttctacttcagcttttaaat
aaaacctattcttga
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integrated database retrieval system
