KEGG   Arabidopsis lyrata (lyrate rockcress): 9325518
Entry
9325518           CDS       T01578                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018  RNA degradation
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9325518
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9325518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9325518
   03041 Spliceosome [BR:aly03041]
    9325518
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9325518
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     9325518
Spliceosome [BR:aly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    9325518
 Complex C
  U2 snRNP components
    9325518
SSDB
Motif
Pfam: LSM SM-ATX DUF1256 LSM14
Other DBs
NCBI-GeneID: 9325518
NCBI-ProteinID: XP_002892156
UniProt: D7KCE0
LinkDB
Position
Unknown
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcttacttcaaggatttggttggacaagaagtgacggttgagctgaag
aacgatttagccataagaggaactcttcactcagttgatcagtatctgaatatcaagctc
gagaacactagggttgttgaccaggacaaataccctcacatgctttcagtgagaaactgt
ttcatcagaggatcagtggtaaggtacgtgcagttacctaaagacggagttgatgttgat
ttgcttcacgacgccgctagaagagaagctaggggtggctga

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