Arabidopsis lyrata (lyrate rockcress): 9325518
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Entry
9325518 CDS
T01578
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9325518
09123 Folding, sorting and degradation
03018 RNA degradation
9325518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9325518
03041 Spliceosome [BR:
aly03041
]
9325518
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9325518
mRNA degradation factors
5'-3' decay
Lsm complex
9325518
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
9325518
Complex C
U2 snRNP components
9325518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1256
LSM14
Motif
Other DBs
NCBI-GeneID:
9325518
NCBI-ProteinID:
XP_002892156
UniProt:
D7KCE0
LinkDB
All DBs
Position
Unknown
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcttacttcaaggatttggttggacaagaagtgacggttgagctgaag
aacgatttagccataagaggaactcttcactcagttgatcagtatctgaatatcaagctc
gagaacactagggttgttgaccaggacaaataccctcacatgctttcagtgagaaactgt
ttcatcagaggatcagtggtaaggtacgtgcagttacctaaagacggagttgatgttgat
ttgcttcacgacgccgctagaagagaagctaggggtggctga
DBGET
integrated database retrieval system