Arabidopsis lyrata (lyrate rockcress): 9325594
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Entry
9325594 CDS
T01578
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9325594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9325594
03036 Chromosome and associated proteins [BR:
aly03036
]
9325594
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
9325594
Coactivators
SAGA/TFTC/STAGA complex
9325594
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
9325594
STAGA complex
9325594
TFTC complex
9325594
SAGA complex
9325594
SLIK complex
9325594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
Motif
Other DBs
NCBI-GeneID:
9325594
NCBI-ProteinID:
XP_002892254
UniProt:
D7KE95
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MSIVPKETVEVIAQSIGITNLLPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASD
VDGALNLRNVEPIYGFASGGPFRFRKAIGHRDLFYTDDREVDFKDVIEAPLPKAPLDTEI
VCHWLAIEGVQPAIPENAPLEVIRAPAENKIHEQKDGPPIDVRLPVKHVLSRELQLYFQK
IAELAMSKSNPALFKEALVSLASDSGLHPLVPYFTNFIADEVTLCTTKVSNGLKDFRLLF
NLMHIVRSLLQNPHINIEPYLYQLMPSVVTCLVSRKLGNRFADNHWELRDFASNLVALIC
KRYGPVYITLQSRLTRTLVNALLDPKKALTQHYGAIRGLAALGHNVVRLLILSNLEPYLS
LLEPELDAEKQKNQMKNYEAWCVYGALLRAAGLCIHDRLKIFPPLPSPSPSFLRKGKGKI
INTDPHKRKLSIDSSENQSPQKRLITMDGPDGVQSQDQSGSAPMQVDNPVENDNPPQNSI
QPSSSEQASDANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDR
VLPFIPSTEMSVFL
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtacctaaggaaacggttgaggtaatagctcaaagtattgggattaccaac
ttgttacctgaagctgctcttatgcttgctcctgatgtcgagtatcgtgtccgagagatc
atgcaggaagctatcaaatgcatgcgtcattctaagagaacgactttaacagcttcggat
gtagatggtgctctcaacttgaggaacgttgagccgatatatggctttgcctcaggagga
ccatttcgttttagaaaggctattgggcatcgcgatttgttctacactgatgacagagaa
gtggatttcaaagatgtgatcgaagccccgctaccaaaagctccccttgatactgaaatt
gtttgtcactggctggctattgaaggagtgcaaccagctataccagaaaatgctccttta
gaagtcattagagcacctgcagaaaacaaaatccatgaacaaaaagacggacctcctatt
gacgttaggctaccagtaaagcatgtactatctagggaacttcagttatacttccaaaag
attgctgaacttgcaatgagcaagtcaaatcctgctctgtttaaagaagcattagtgagc
ttggcctcagactcaggacttcatcctctagttccatattttacaaatttcattgctgat
gaggtaacattatgcaccaccaaggtttcaaatggtttaaaagactttcgactcctgttt
aatctaatgcacattgttagaagtcttctacagaatcctcacataaacatagaaccttat
ctgtaccagttgatgccatctgttgtaacatgccttgtatcaagaaagcttggaaataga
tttgctgacaaccattgggaactcagagattttgcgtcaaatctggttgcactgatatgt
aaaaggtacggacccgtttatattactcttcagtctcgtcttacaagaactttagtcaat
gcactgttggacccaaagaaagctttgactcagcactatggtgcaattagaggattagca
gctttggggcacaatgttgtacgccttctaattctatcaaatctcgaaccgtatctaagt
cttctcgaacctgaattggatgctgagaagcaaaaaaatcagatgaagaactacgaagct
tggtgtgtatatggagccttgctgcgagctgcaggcttgtgtatacatgaccggcttaaa
atcttcccacctttaccatctccatcaccaagtttcctccgtaagggaaagggaaagata
atcaatactgatccccacaagcggaagctgagcatagattcttcagaaaaccaatcgccg
cagaaaagattgataaccatggatgggccagatggtgtgcaatcacaagatcaatccggc
tcagctccaatgcaagtagataatccagtggaaaatgacaatccgccacaaaactctatt
caaccatcctcatcagaacaagcttctgatgctaacgaatctgaaagcagaaatggaaag
gtgaaagaaagcggtaggagtagggctattaccatgaaagcaatccttgatcagatatgg
aaagatgatcttgattccggacggctattggtgaaactgcacgaactctatggtgatagg
gttcttccctttatcccttctacagagatgtcagtattcctctaa
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