Arabidopsis lyrata (lyrate rockcress): 9325840
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Entry
9325840 CDS
T01578
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
9325840
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
9325840
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
9325840
NCBI-ProteinID:
XP_002892534
UniProt:
D7KJV8
LinkDB
All DBs
Position
Unknown
AA seq
675 aa
AA seq
DB search
MKKLAGRLLHRFTNHETAFNAGHHCSQGTDQGTSGLSHRKDLNMPSQGVHLHIHDRYVLM
DNGILQVTLSKPGGIITGIKYNGIDNVLEVRNKETNRGYWDLHWNEPGGKGIFDVISGGT
FRVIVETEEQVEISFLRTWDPSLEGKFIPLNIDKRFVMLRGSSGVYSYGIYEHLKDWPGF
ELGETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPRLQ
GEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAV
FHSTHYAGKTMMPRFEHGEPWKKVYGPVFIYLNSTANGDDPLCLWDDAKIKMMAEVESWP
YSFVASDDYPKSEERGTARGRLLIRDRFINSDLISAGGAYVGLAPPGDSGSWQIECKGYQ
FWAIADEAGYFSIGNARPGEYNLYAWVPGFIGDYHNGTIVTVTSGCMIEMGDIVYEPPRD
GPTLWEIGIPDRKASEFFIPDPDLTLVNRVLVHDQDRFRQYGLWKRYTDLYPNADLIYTV
GVSDYRRDWFFAHVPRKKGDVHEGTTWQIRFNLENIDQKANYKLQVAIASATLAELQIRV
NDAEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNVPGNRLVQGDNTIFLKQPRCNGPF
QGIMYDYIRLEGPPS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactggctggtcggctccttcatcgtttcactaatcatgaaaccgctttcaac
gccggccaccactgctcacaagggacagatcaaggtacaagtggtcttagtcatagaaag
gatctcaatatgccctctcaaggtgtccacctgcatatccatgaccgatatgttctgatg
gacaatggaatcctccaagtaacactgtcaaagccagggggtattatcactgggataaag
tataacggcatcgacaatgtgctcgaagttcgtaacaaggagactaaccgagggtactgg
gacctgcactggaatgaacctggaggcaagggaatatttgatgtcatcagtggagggact
ttcagggtcatagtcgagactgaagaacaggttgagatctcatttctaagaacatgggat
ccatcccttgaggggaagttcattcccttgaatatcgataaaaggtttgtaatgctccgt
ggctcctctggagtgtactcatacggcatttatgaacacctaaaggattggcctggcttt
gaacttggagaaacaagaattgcgttcaagctcagaaaagacaaattccattacatggct
gtggcagatgacagaaaaaggataatgccttttccggatgatctatgcaaaggaagatgc
caaactctagattaccaggaagcttctctactcactgctccatgtgatccacgcctgcaa
ggcgaagtagatgacaaataccaatactcgtgtgagaataaggatctgagagtacatgga
tggatatccttcgatccacctgtaggattctggcaaattacgcccagtaatgagttccgc
tctggtggaccactcaaacaaaacctcacttcacatgttggcccaaccactcttgcagtg
tttcacagtactcattatgccggaaaaaccatgatgcctcgctttgaacacggcgagcct
tggaagaaagtctatggccctgttttcatttacctaaattcaacagccaatggagatgat
ccactttgcttatgggacgatgctaagataaagatgatggctgaagttgaaagttggcct
tatagctttgtggcatctgacgactatccaaagtctgaagaacgtggcacagcccgtggt
agattacttatccgcgacaggttcataaacagtgatttgatttcagcaggaggtgcttat
gtgggtttggctccacctggtgattctggttcttggcaaattgaatgcaagggataccaa
ttttgggcgatagcggatgaggctggctatttctcaatagggaacgcacgacctggcgag
tataatctctatgcttgggtccccggtttcattggagattatcacaacggcacaattgtt
acagtgacttcagggtgcatgattgagatgggtgatatcgtttatgaacctccaagagat
ggacctacactatgggaaatcggtatccctgaccgaaaagcttctgagttctttatccca
gatcctgatctcactcttgtaaacagggtgttagtccatgaccaagacaggttcaggcaa
tatgggttatggaagagatacacggatttgtatccaaatgctgaccttatttacactgtc
ggtgtaagcgattaccgcagagactggttctttgctcatgttcccaggaagaaaggagat
gtgcatgaaggaactacttggcagattaggtttaatcttgaaaacattgatcaaaaggca
aattacaaactgcaagtcgccatagcatctgcaaccttagccgaattgcagattcgagtc
aatgatgcggaagcaatccgccctctcttcacaaccggacttattgggagagacaactca
atagcgaggcacgggatccacggggtttacatgctgtatgcggtgaacgtacctggtaac
cggcttgtacaaggtgataacactatattcctgaaacagccaagatgcaatggtcccttt
caagggataatgtatgactacattcgtcttgaaggccctccttcttag
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