KEGG   Arabidopsis lyrata (lyrate rockcress): 9325916
Entry
9325916           CDS       T01578                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:aly04812]
    9325916
Cytoskeleton proteins [BR:aly04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     9325916
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st eIF2A Beta-prop_EIPR1 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_IP5PC_F PROPPIN VPS8_N Ge1_WD40
Other DBs
NCBI-GeneID: 9325916
NCBI-ProteinID: XP_020870619
LinkDB
Position
Unknown
AA seq 1025 aa
MMAKRGYKLQEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSIGKTTSLMSLCGHTS
PVDSVAFNSGEILVLGGASSGVIKLWDLEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGS
SDTNLRVWDTRKKGCIQTYKGHTCGISTIRFSPDGRWVVSGGLDNVVKVWDLTAGKLLHE
FKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEAAGVRAIAFHPDGQ
TLFCGLDDGLKVYSWEPVICRDGVDMGWSTLGDFCINEGKFIGCSYYRNSVGIWVSDISE
LEPYGAVSEDKNECMLKRFSVFNDQSERMGSGPRGSVSPDYETKEIKNIYVDSTGGNSNV
AQNPGSLKATLPLESGKVATMASEKQNATYFGQAGDKYSSMHTVASRDSDSGEESSYSER
ESITFSRTKSGMLLRPAHVRKTLAKFEESKQSAVVQSATRKKSGLAVEEEPQTQNVLLSE
QNGSKPFDAEDSTIKGITDKFEKGLSSEPPTDETNRMFLKPPRVHRSSNSKYNDLKRVMS
ADSATFDKGGMEYSGEVEDICSKTERVLSPEKPGDEQKNTEYPSSSRESNPVKIVKGVNV
VSGRTRSLVEKFERGEKITHTEAASTTITQNTNAVLEDPRKTSRQTGETPVISTRRARST
PARVMPIVLNRDSNMTSDEPLLTQPARTSVPVMPVILSQATNVTYDEPRLTQESRTSPSR
ILPVTFNQATNITSEEASVTSRRPRRNSAARVRPVSLSQADMTSHECPVTSVRPARTSPA
RVMPTKLNQSVNMTSDTSHIASRHRVSPTQMLTTPTVIDQVADMTLDETHATQIQPACDN
LPQKEEPNISERENDSDITENLMLTHNKFLTTLQSRLTKLQIVRHFWERSDVKGAIGALR
KLTDQSVQADVISILTDKIEILTLDMFSQLVPVLTSLLGSRTERPVNVSLDMLLKLVAVF
GTVIRSTVSAPRIVGVDLHADERLEICQICSAGLHKIQRILPVLARRGGLITRKAQELNL
VLQEP
NT seq 3078 nt   +upstreamnt  +downstreamnt
atgatggcgaagcgtggatataagctacaagagtttgtggcacattccggaaatgtgaat
tgtctaagtatcggaaagaagacgtcacggctccttctaactggtggagatgattataag
gtcaacctttggtcaatcggcaaaaccacttcgctaatgagtctttgtgggcatacaagc
ccggttgattcagtagcttttaactcgggagaaattttggtgctcggtggagcttcttca
ggtgtgataaagctgtgggatctagaagaagcaaagatggttagagcttttactggacac
agatccaattgttctgctgttgagtttcatccatttggtgaatttcttgcatcgggatct
agtgacacaaatctaagggtttgggatactagaaagaagggatgcatccaaacatacaag
ggtcatacttgcggtattagcactatcagatttagtcctgatggtcgttgggtagtgtct
ggaggacttgacaacgttgtaaaggtatgggatttgactgctggaaagctcttgcacgag
tttaagtttcatgaaggacctatccgttccctagacttccatccgcttgagtttctccta
gccacaggttctgctgacagaactgtgaaattctgggatttggaaacgtttgaactgatt
ggatctactagaccagaggctgctggagttcgtgcaatcgcttttcatccagatggtcaa
acccttttctgtggattggatgatggcttgaaggtttattcatgggaaccagtgatttgc
cgggatggtgttgatatgggatggtcaacccttggtgacttctgcatcaacgaaggaaag
ttcattggttgttcatattaccgaaattctgttgggatatgggtttcagatatatcggaa
cttgagccatatggagcagtatctgaggataagaatgaatgcatgctgaaaagattcagt
gtcttcaatgatcagtctgagagaatgggaagtggcccaaggggcagtgtatccccagat
tatgagacaaaagagataaagaacatatacgttgactccacaggtggaaattcgaatgta
gcgcaaaatccaggatctctgaaagcgacattgcctttggaatcaggaaaagtagctact
atggcgagcgagaagcagaatgcaacatattttggacaagcaggagataagtattctagt
atgcatactgttgcatcgcgggatagtgatagtggagaggaatcttcttattcagaaagg
gaatctatcactttctcaagaactaaatcgggtatgttgctaagaccagctcatgtaaga
aagacgctagcaaagtttgaagaatcaaaacagtcagcggttgttcaatctgcaactcgg
aagaaaagcggattggctgttgaggaggaaccacaaactcaaaatgtacttctttcagaa
cagaatggtagtaaaccttttgatgctgaagattctaccatcaagggtattacagacaag
tttgaaaaaggtttatcatcggaaccaccgactgatgaaacgaatcgtatgttccttaaa
ccacctcgtgtccataggtcatcaaatagcaagtacaatgacttaaaaagagtaatgtcc
gctgattctgcaacttttgacaaaggtgggatggagtactcaggagaggtagaggatatt
tgcagcaaaactgaaagagttctttcaccagaaaaacctggtgatgaacagaaaaacact
gaataccctagcagcagcagagaatcgaaccctgtgaagattgttaaaggagtaaatgtt
gtctcggggaggacacgctcgttagttgagaagtttgagagaggagaaaaaattactcat
accgaagcagccagtacaacaataactcagaacactaatgcagtgctggaagatccgcgt
aagacatcaagacagacaggtgaaactcctgtcatatcaacacgacgagctaggagtacc
ccagccagagtgatgcctattgttctcaatcgggatagtaacatgacatctgatgagcct
cttttaacacaaccagctaggacttcagttccagtgatgcctgtgatactcagtcaagct
actaatgtcacatatgatgagcctcgtttaacacaagaatctagaacttctccatcccgt
atattgcctgtgacattcaatcaggcgacaaatattacatctgaggaggcttctgtaaca
tcaaggcgaccacgcaggaattctgcagcacgagtaaggcctgtgtcactcagtcaggca
gacatgacatctcatgagtgcccagtaacatcagtacgtccagctaggacttctcctgca
cgtgtaatgcccacgaaactaaatcaatctgttaacatgacatctgatacatctcatata
gcatccaggcaccgcgttagtccaacacaaatgttgactacacccactgtcattgatcaa
gtggctgatatgacattggatgagacacatgcaacacaaattcaaccagcttgtgataac
ttgccccagaaggaagagccgaatatatctgagagggaaaatgatagtgacatcactgaa
aatcttatgctaactcataacaagttcttaaccactcttcaatcgaggttgacaaagtta
caaattgtaagacatttttgggagcgtagcgatgttaaaggcgcgatcggggcattgaga
aagctgacagatcagtctgttcaagcagatgtgatcagtattctaaccgataaaatagag
attctcacattggatatgttttctcagttggtccctgtcctcacaagcttattgggtagc
aggacagagaggccggtaaatgtctccttggatatgctcttgaagcttgtagcagtgttc
ggtacagttatacggtcaactgtctcagctccacggattgtcggtgttgatcttcatgca
gatgaaaggctagaaatttgccaaatttgttcagcgggattgcacaagattcaaaggatt
cttccagttctcgcaagaagaggcggtctaataacaagaaaggctcaagaactaaaccta
gttcttcaagaaccatag

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