KEGG   Arabidopsis lyrata (lyrate rockcress): 9326167
Entry
9326167           CDS       T01578                                 
Name
(RefSeq) periodic tryptophan protein 2 homolog
  KO
K14558  periodic tryptophan protein 2
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    9326167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aly03009]
    9326167
Ribosome biogenesis [BR:aly03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    9326167
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Utp12 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_HPS5 NBCH_WD40 Beta-prop_DCAF4 WD40_RFWD3 WD40_like Ge1_WD40 B-prop_COPA_B_2nd Beta-prop_NUP159_NUP214 WDR54 Beta-prop_Nup120_160 Utp21
Other DBs
NCBI-GeneID: 9326167
NCBI-ProteinID: XP_002892868
UniProt: D7KCR5
LinkDB
Position
Unknown
AA seq 895 aa
MNYRFQNLLGAPYRGGNALITQNTQLISPVGNRVSVTDLNKNHTVTLSLDSSSNICRIAA
SPDGTFLLAVDEQNRGLFINLPRRVVLHRITFNDNVSALKFSPNGKFIAVGIGKLVQIWR
SPGFRRAVMPFELVRTFANSDDIVVSLEWSLDSDYLLVGSKDLAARLFCVRKLKGVLNKP
FLFLGHRDSVVGCFFGVDKMTNKVNRAFTIARDGYIFSWGYTGKDVKMDESEDGHSEPPS
PVTPERADEVMVENGGGVGTDLKKRKEYDGKDLESDDDEEYMHRGKWVLLRKDGFNQASA
KVTACDYHQGLDMVVVGFSNGVFGLYQMPDFICIHLLSISREKLTTAVFNQRGNWLTFGC
AKLGQLLVWDWRSESYILKQQGHYFDVNCVTYSPDSQFLATGADDNKVKVWSVMSGSCFI
TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLTADPS
GDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQILASSSWDNTVRLWD
VFASKGTVETFQHNHDVLTVAFRPDGKQLASSTLDGQIHFWDTIEGVLMYTLEGRRDIAG
GRVMTDRRSAANSSSGKCFTTLCYSADGGYILAAGTSRYICMYDIADQVLLRRIQISHNL
SLDGVLDFLHSKKMTEAGPMDLIDDDNSDEEAGIDKQSRGNLGYDLPGSRPNRGRPIIRT
KSLSIAPTGRSFAAATTEGVLIYSIDDTFIFDPTELDIDVTPEAVEAAIKEAEVSRALAL
SMRLNEDSLIKKCIFAVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQE
ICKAHGSSIQRNYRILLPALRSLQKAITRAHQDLADMCSSNEYTLRYLCSVPNNH
NT seq 2688 nt   +upstreamnt  +downstreamnt
atgaactaccgttttcagaaccttcttggcgctccttacagaggcgggaatgcacttatc
actcagaatactcagctaatttcaccggttggtaatcgtgtctccgtcaccgacctcaat
aagaaccatacggttactctttcgctcgattcctcttccaacatatgtcgcatcgctgcc
tcacccgacggcactttcctactcgccgtcgatgaacaaaaccgaggccttttcatcaac
ttacctagacgggtagttcttcacagaattaccttcaatgataacgtcagtgccttgaag
ttcagccctaatggtaagtttatcgctgttggaattggtaagttggtgcagatatggcga
tcacctggtttcagacgagctgttatgccctttgagctagttaggacttttgctaattct
gatgatatagttgtctccttggagtggagcttggactctgattatttgctcgttggctca
aaggatttggcagctaggttgttttgtgttagaaagttgaagggtgttttaaataagccc
tttttgtttctgggtcatagagattctgtggtgggttgcttctttggtgttgataaaatg
actaacaaggtcaacagggctttcacgattgcacgggatggttacatttttagttgggga
tatactggaaaggatgtcaaaatggatgaatcagaagatggccactctgagccaccgtca
cctgttactccagagagggctgatgaggtgatggtggaaaatggtggtggtgttggtact
gatctcaagaaacgaaaagagtatgacggtaaagatcttgaatctgatgatgatgaagag
tatatgcacagagggaaatgggttttgttgaggaaggatgggtttaatcaggcatcagca
aaggtgacagcttgcgactatcaccaggggctcgacatggttgtggtggggttctcaaat
ggtgttttcgggctttatcaaatgccagatttcatctgtattcatctgctgtctatttct
agggagaagctgacaacagctgtctttaatcagcgtggtaattggctgacctttggttgt
gcaaaacttgggcaactgttagtctgggactggcgatctgaaagctatatactgaagcaa
caaggacactattttgatgtcaactgtgtcacttactcacccgattcacagttcctggca
actggtgctgatgataacaaagtcaaggtgtggagcgttatgtcaggatcatgtttcatc
acattcaccgagcataccaatgcagtgactgctctccattttatggctgacaaccactcc
ctcttaagtgcatctctggacggcactgttcgtgcttgggattttaaaagatacaagaac
tataagacatacacaacccctacaccccgacaatttgtttccttaacagcagacccgagt
ggtgacgttgtctgtgctgggaccctagattcatttgagatttttgtatggtccaagaag
actgggcaaataaaggatattctgagtgggcatgaagctcccgttcatgggttgatgttt
tctcccttaacgcaaattttagcttcatcctcatgggacaatacggttcggttgtgggat
gtgtttgctagcaaaggcaccgtggagacgtttcaacacaaccacgatgttctaacagtt
gctttccgtcctgatggaaagcagttagcctcgagtacgctagatgggcagattcatttc
tgggacaccattgaaggtgtgttgatgtacaccttagaggggcggagagatatcgctgga
ggtcgagtcatgactgaccgtcggtctgcagctaattcaagttctggaaagtgttttaca
acattgtgctattccgctgatggaggttatattctagccgcaggaactagcagatatatt
tgcatgtatgacatcgcagatcaggttcttctgcgccggattcagatatcccataatctt
tcgttagatggggttcttgacttcttgcactccaagaagatgacagaagcaggaccaatg
gatctgatcgatgatgacaacagcgatgaagaagctggcattgataaacagtctcgaggg
aatctgggttacgatctgcctggatccaggcctaaccgtggcaggcccattatccggaca
aaaagcctcagcattgccccaactgggaggagctttgctgctgcaacaacagaaggagtt
ctcatctattcaatcgacgataccttcatctttgatccgaccgaacttgatatagacgtc
actccagaggctgttgaggctgccataaaagaggctgaagtgagcagagcacttgctcta
agtatgcgtttgaacgaagacagccttatcaaaaaatgcatctttgctgtagctcctgca
gacataaaagctgttgcaatctctgtccgccagaaatacttagaaagacttatggaagct
ttggtggatctgcttgagaactgtcctcatctggagttcatacttcactggtgtcaggaa
atctgcaaggcacacggaagctccattcagaggaactacagaattctattgcctgcactg
agatcgttgcagaaggcaatcaccagagcccaccaggatctggcagatatgtgttcttcc
aatgagtacacgcttcgctacttgtgttctgttccaaacaatcattga

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