KEGG   Arabidopsis lyrata (lyrate rockcress): 9326192
Entry
9326192           CDS       T01578                                 
Name
(RefSeq) protein RAE1
  KO
K14298  mRNA export factor
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    9326192
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9326192
   03036 Chromosome and associated proteins [BR:aly03036]
    9326192
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     9326192
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    9326192
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_TEP1_C EIF3I Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR75_2nd WD40_RFWD3
Other DBs
NCBI-GeneID: 9326192
NCBI-ProteinID: XP_020870834
LinkDB
Position
Unknown
AA seq 356 aa
MSTSGDQATANNTNPNNSYEITPPATDSISSLSFSPRADILVATSWDCQVRCWEITRSDG
SIASEPKVSMSHDNPVLCSAWKDDGTTVFTGGCDKQAKMWPLLSAAQPFTVAMHDAPICE
IAWIPGMNLLVTGSWDKTLKYWDARQATPAHTQQLPDKCYALTVKESLMVVGTGDRNLLV
FDLKKPQMEFKRIESSLKDQTRCLAAFPDQKGFLVGSIGGSVGVHHIDDAQVSKNYTFKC
HRVGNTICSVNSLNFHPIHGTFISTGSDGTFSFWDKDSKTRLKAMSRCDQPITYSTFNHD
GALFAYAVGYDWSKGAENHKPDTAKTSIYLHLPEEADVKPKSTYKVGRFTVKKEQI
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgtctacttccggtgatcaagccaccgcgaacaacactaaccctaacaactcctacgag
attactccaccagccaccgactctatctcaagcttaagttttagtccaagagccgatata
cttgtagcaacttcatgggattgtcaggtgagatgttgggaaataacccgtagtgacggc
tctatagccagtgaaccaaaagtatcaatgtcgcatgataatccggttttgtgttctgct
tggaaagatgatggaaccacagtctttacaggaggatgtgataagcaggcaaagatgtgg
ccattattgtctgctgctcaaccattcactgttgctatgcacgatgcacctatttgcgag
atagcttggatccctggaatgaatctccttgtcactggaagctgggataaaactttgaaa
tattgggacgcaagacaggcaactccagctcatacccaacagcttccagacaaatgttat
gcattgacagtgaaagaatctctgatggtcgttgggactggggatagaaatttactagtt
ttcgacttgaaaaaacctcagatggagttcaagagaattgaatcgtcactgaaggaccag
acaaggtgtcttgctgcatttcctgatcagaaagggtttttggttggttcaattggggga
agtgttggtgttcatcacattgatgatgcacaagtgagcaaaaactacactttcaaatgc
cacagagtaggcaatactatttgctctgtaaattctctgaattttcacccgatacatggc
acgtttatcagcactggctctgatggtacattcagtttctgggataaagatagtaaaaca
agacttaaggccatgtcaaggtgcgatcagccgattacttacagtacgttcaatcacgac
ggggcattatttgcgtatgcggttggttatgattggagcaaaggtgcagaaaatcacaag
ccagatactgccaagaccagtatatacttgcacctgccagaggaagccgatgtgaagccc
aagtcaacatacaaagtcggcagatttactgtgaaaaaggagcagatttga

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