KEGG   Arabidopsis lyrata (lyrate rockcress): 9326321
Entry
9326321           CDS       T01578                                 
Name
(RefSeq) cyclin-dependent kinase D-3
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022  Basal transcription factors
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    9326321
  09124 Replication and repair
   03420 Nucleotide excision repair
    9326321
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:aly01001]
    9326321
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aly03021]
    9326321
   03019 Messenger RNA biogenesis [BR:aly03019]
    9326321
   03400 DNA repair and recombination proteins [BR:aly03400]
    9326321
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     9326321
    2.7.11.23  [RNA-polymerase]-subunit kinase
     9326321
Protein kinases [BR:aly01001]
 Serine/threonine kinases: CMGC group
  CDK family
   9326321
Transcription machinery [BR:aly03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     9326321
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     9326321
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     9326321
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr ABC1 Haspin_kinase
Other DBs
NCBI-GeneID: 9326321
NCBI-ProteinID: XP_020869039
LinkDB
Position
Unknown
AA seq 393 aa
MPEMEQPKKVADRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALR
EIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPADIKSYLLMT
FKGLAYCHDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRKFTHQVFARWYRAP
ELLFGAKQYGAAVDVWAVGCIFAELLLRRPFLQGNSDIDQLSKIFAAFGTPKADQWPDVT
KLPDYVEYQFVPAPSLRSLFPAVSEDALDLLSKMFTYDPKARISIKQALEHRYFTSAPAP
TDPAKLPKPVHKQDGKSSYGKHEAITVLSPPRKLRRVMPERGRVDSLKAHVDKDQQAPMS
LDFTILAERPPNRPTITSADRSHLKRKLDLEFQ
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgccggagatggagcagccaaagaaagttgctgataggtatctcaagcaagaggttctt
gggcaaggtacctatggagtcgtcttcaaggccactgatactaagacggaacaaactgta
gcaatcaagaagataaggcttggtaaacaaagggaaggtgtaaatattacagctctcagg
gaaatcaaaatgctcaaagagctcaagcatcctcatataattctgctcattgatgcattt
cctcacaaggaaaacttgcatcttgtctttgagttcatggagactgacctcgaagctgtc
atccgcgattccaacatattcctctcacccgccgacatcaaatcttacctcctaatgaca
tttaaaggacttgcttattgccacgataaatgggttttgcacagggatatgaagccaaat
aacttgttaataggagttgatggacaactgaagcttgcagattttggcttagcacgtata
tttggtagtccaaatcgtaaatttacccaccaggtgtttgctagatggtacagagcacca
gaacttttgtttggtgcaaaacaatatggtgctgcagttgatgtttgggccgttggctgc
atattcgccgaacttctactacgcagaccatttcttcagggaaacagtgatattgatcaa
ttaagcaaaatatttgctgcttttgggacaccaaaagcagatcagtggccggatgtaaca
aagcttccagattatgtagagtatcaatttgtccctgcaccgtctctacgttctttattc
ccagcagttagtgaagatgctctcgacttgttgtccaaaatgtttacctatgacccaaag
gccagaatttccataaagcaggctctagaacacagatacttcacttctgcacctgctcct
actgacccggctaagctcccaaagcccgttcataagcaggatggtaaatcctcttacggt
aaacatgaggccattacagtgctatcaccaccacgtaagcttagaagagtgatgcctgag
cgtgggagggttgatagtttgaaggctcatgttgacaaggatcaacaagcacccatgtca
ttagattttaccatcctcgctgagcgacctccaaaccggccaacaatcaccagtgctgat
agatctcatctgaagaggaaactcgatcttgagttccaataa

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