Arabidopsis lyrata (lyrate rockcress): 9326382
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Entry
9326382 CDS
T01578
Name
(RefSeq) sm-like protein LSM1A
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9326382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9326382
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9326382
mRNA degradation factors
5'-3' decay
Lsm complex
9326382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
9326382
NCBI-ProteinID:
XP_020867022
LinkDB
All DBs
Position
Unknown
AA seq
128 aa
AA seq
DB search
MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVIEEAYERVIVGDL
YCDIPLGLYIIRGENVVLIGELDVEKEELPAQMVQVSEAEIKRAQKAEKEEMLLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgctcctgatgatatcttcttctccacttctcttgctgcttacttagac
aagaaacttcttgtgttgcttcgtgatggtaggaaactgatgggtctacttcggtcattt
gatcaatttgctaatgctgttatagaagaagcttatgaaagagtcatcgtgggtgatctc
tactgtgatattcccttaggtctatacattatccgtggagaaaatgttgtcttgattggt
gaattggacgttgaaaaagaagagcttcctgctcaaatggttcaggtttcagaagcagag
ataaaaagggctcagaaagcagagaaagaagaaatgcttttgaagggtacaatgcgaaaa
agaatggagttccttgatctcgattag
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integrated database retrieval system