Arabidopsis lyrata (lyrate rockcress): 9326504
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Entry
9326504 CDS
T01578
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
9326504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9326504
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
9326504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
LRR_NXF1-5
F-box
LRR_At1g61320_AtMIF1
LRR_8
Motif
Other DBs
NCBI-GeneID:
9326504
NCBI-ProteinID:
XP_020867682
LinkDB
All DBs
Position
Unknown
AA seq
360 aa
AA seq
DB search
MVMGGEASMELDQCFQKMKMEGISIKEWRDIPVELLMRILSLVDDRNVIVASGVCCGWRD
AFSFGLTRLRLSWCNNNMNSLVLSLAPKFVKLQTLILRQDKPQLEDNAVEAIANHCHELQ
ELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRLCRKLKVLNLCGCV
KAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMNLAYGCPDLRTLDLCGCVLITDESV
VALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNIS
QCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgggaggagaagcatccatggagctggaccagtgttttcagaagatgaagatg
gaaggaatctcgatcaaagagtggagagacatccctgtggagcttctgatgaggatcctt
tcccttgttgatgatcgtaatgtcattgttgcttctggtgtttgctgtggctggagagat
gctttctcttttggcctcactcgtctccgtctctcttggtgtaacaacaacatgaacagc
ttggttctttctcttgctcccaagtttgtaaagctgcagactttaatactgaggcaggac
aaaccgcaactagaggacaatgcagtggaggccatagcaaatcactgccatgagttacaa
gaacttgatctcagcaaaagcttgaaaattacagatcgttcactttatgcacttgctcat
ggttgccctgacctcacaaaactcaaccttagtggctgcacttcattcagtgacactgct
attgcgtatttgaccagattatgcagaaagcttaaagttttgaatctttgcggatgtgtc
aaagctgtaactgacaatgccttggaggcaattgggaataactgcaatcagatgcagtca
ctaaacttgggctggtgtgagaatatcagtgatgatggggtaatgaatttagcttatggc
tgtccagatctcaggacccttgacctctgtggctgtgttctaattacagatgagagtgtg
gtagctctagcagactggtgtgtccacttgaggtcactggggttatactattgcagaaac
ataacagacagggcgatgtactcgttagctcaaagcggggtaaagaacaaaccgggttca
tggaaatcagtaaagaaaggcaaatacgatgaagaaggactgagaagtctcaacattagc
caatgcactgccctcacaccttcagcggttcaagctgtttgtgattcctttcccgcgctt
cacacatgttcaggaaggcattcgcttgtcatgagcggttgtctgaacttaacaactgtg
cactgtgcttgtatccttcaggctcatcgtgcgcacaatgcggttcctcatccggctcat
tga
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