Arabidopsis lyrata (lyrate rockcress): 9326515
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Entry
9326515 CDS
T01578
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03410
Base excision repair
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9326515
03410 Base excision repair
9326515
03420 Nucleotide excision repair
9326515
03430 Mismatch repair
9326515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aly03032
]
9326515
03036 Chromosome and associated proteins [BR:
aly03036
]
9326515
03400 DNA repair and recombination proteins [BR:
aly03400
]
9326515
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
9326515
DNA Replication Termination Factors
ELG1-RFC complex
9326515
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
9326515
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
9326515
Check point factors
HRAD17(Rad24)-RFC complex
9326515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
Mg_chelatase
AAA_11
AAA_16
AAA_24
AAA_14
AAA_5
ResIII
DEAD
SLFN-g3_helicase
PhoH
AAA_assoc_2
nSTAND3
AAA_28
AAA_19
AAA_30
RNA_helicase
AAA_7
AAA_2
AAA_25
DUF815
Parvo_NS1
IstB_IS21
NPHP3_N
NB-ARC
DNA_pol3_gamma3
TIP49
AAA_18
bpMoxR
Motif
Other DBs
NCBI-GeneID:
9326515
NCBI-ProteinID:
XP_020866892
LinkDB
All DBs
Position
Unknown
AA seq
339 aa
AA seq
DB search
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
NRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVV
PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI
CKCLAETDKRLVDGADEYLQLLDVASNTILALSEMAQDF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagttcttcagagctcacagccatgggttgagaaataccggccgaagcaggtt
aaggacgttgctcaccaggaagaggtggttcgtgtcctcaccaacactctccagactgct
gactgcccgcacatgctcttctatggaccgccaggcactggaaaaaccactactgcactt
gccatcgcccaccagctttttggacctgaactatacaagtctagggtgttggagctcaat
gcaagtgatgacagaggcattaatgttgttcggacaaagatcaaggattttgctgctgtt
gctgttgggtctaatcatcgtcaaagcggttatccttgcccatcgtttaagatcatcatc
ctagatgaggctgattcgatgacagaagatgctcagaacgccttgaggcgcacaatggaa
acttactccaaagtcaccagattctttttcatatgtaattacatcagcaggatcatagag
ccccttgcttccaggtgtgcgaagttcaggtttaaaccactttctgaagaagtcatgagt
aaccgtatattgcatatttgtaatgaagaaggtctcagccttggtggagaggctctttca
actttgagctccatatcacaaggtgatctccgtagggccatcacatatctgcagagtgct
actcggttgtttgggtcaacaataacttctacagatttactcgatgtatctggggtagtt
cccctggaggtagtcaataaactttttactgcatgcaaaagtggtgatttcgatattgca
aacaaggaagtggataacatagtcgcagaaggatatccggcatctcaaatcatcaatcag
ctattcgatatagttgcggaggctgacagtgacataacagacatgcaaaaggctaaaatc
tgcaaatgtttagctgaaactgataagcgacttgtagacggggcggatgagtacttgcag
cttctggatgtggcaagcaatacaattcttgccctctcagaaatggctcaagacttctaa
DBGET
integrated database retrieval system