KEGG   Arabidopsis lyrata (lyrate rockcress): 9326515
Entry
9326515           CDS       T01578                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
aly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9326515
   03410 Base excision repair
    9326515
   03420 Nucleotide excision repair
    9326515
   03430 Mismatch repair
    9326515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9326515
   03036 Chromosome and associated proteins [BR:aly03036]
    9326515
   03400 DNA repair and recombination proteins [BR:aly03400]
    9326515
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    9326515
  DNA Replication Termination Factors
   ELG1-RFC complex
    9326515
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    9326515
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     9326515
  Check point factors
   HRAD17(Rad24)-RFC complex
    9326515
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_24 AAA_14 AAA_5 ResIII DEAD SLFN-g3_helicase PhoH AAA_assoc_2 nSTAND3 AAA_28 AAA_19 AAA_30 RNA_helicase AAA_7 AAA_2 AAA_25 DUF815 Parvo_NS1 IstB_IS21 NPHP3_N NB-ARC DNA_pol3_gamma3 TIP49 AAA_18 bpMoxR
Other DBs
NCBI-GeneID: 9326515
NCBI-ProteinID: XP_020866892
LinkDB
Position
Unknown
AA seq 339 aa
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
NRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVV
PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI
CKCLAETDKRLVDGADEYLQLLDVASNTILALSEMAQDF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccagttcttcagagctcacagccatgggttgagaaataccggccgaagcaggtt
aaggacgttgctcaccaggaagaggtggttcgtgtcctcaccaacactctccagactgct
gactgcccgcacatgctcttctatggaccgccaggcactggaaaaaccactactgcactt
gccatcgcccaccagctttttggacctgaactatacaagtctagggtgttggagctcaat
gcaagtgatgacagaggcattaatgttgttcggacaaagatcaaggattttgctgctgtt
gctgttgggtctaatcatcgtcaaagcggttatccttgcccatcgtttaagatcatcatc
ctagatgaggctgattcgatgacagaagatgctcagaacgccttgaggcgcacaatggaa
acttactccaaagtcaccagattctttttcatatgtaattacatcagcaggatcatagag
ccccttgcttccaggtgtgcgaagttcaggtttaaaccactttctgaagaagtcatgagt
aaccgtatattgcatatttgtaatgaagaaggtctcagccttggtggagaggctctttca
actttgagctccatatcacaaggtgatctccgtagggccatcacatatctgcagagtgct
actcggttgtttgggtcaacaataacttctacagatttactcgatgtatctggggtagtt
cccctggaggtagtcaataaactttttactgcatgcaaaagtggtgatttcgatattgca
aacaaggaagtggataacatagtcgcagaaggatatccggcatctcaaatcatcaatcag
ctattcgatatagttgcggaggctgacagtgacataacagacatgcaaaaggctaaaatc
tgcaaatgtttagctgaaactgataagcgacttgtagacggggcggatgagtacttgcag
cttctggatgtggcaagcaatacaattcttgccctctcagaaatggctcaagacttctaa

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