Arabidopsis lyrata (lyrate rockcress): 9326593
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Entry
9326593 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9326593
09123 Folding, sorting and degradation
03018 RNA degradation
9326593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9326593
03041 Spliceosome [BR:
aly03041
]
9326593
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9326593
mRNA cycle factors
Stress granule specific factors
9326593
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
9326593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
RRM_Nup35
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
9326593
NCBI-ProteinID:
XP_002890531
UniProt:
D7KMJ2
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MAAAVATGVAPATMVDQIPSPTAQTSVQVPVSIPAPSPAAVADQTHPNSSLYAGDLDPKV
TEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFERPIR
IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGF
VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI
GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY
VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS
SKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQAL
FSQIRAPGPMSGFHHPPGGPMSGPPQHMYVGQNGASLVPSQPIGYGFQPQFMPGMRPGSG
PGNFVMPYPLQRQPQTGPRMGFRRGATNMQHHIQQQQLMNRNPTPGMRYMNGAGNGRNGM
DSSVPQGILPPIMPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVE
RHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPPDHELGFSTT
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggttgcgacgggtgtcgcaccggcaacaatggttgatcaaattccgagt
ccgacggctcagacttcggttcaggttccggtttcgatacctgctccatctccggcagcg
gttgccgatcaaacacatcccaactcgtcgctctatgcgggagatttggacccaaaagtg
actgaagcgcatctgttcgatttgttcaagcatgtcgctaatgttgtttcggtaagagtt
tgtcgtgaccagaatcgtcgatccttgggatatgcctacatcaatttcagtaaccctaat
gatgcttaccgagcaatggaggctttgaactacactcccctctttgaaaggcccattcgg
atcatgctctcgaaccgtgatccgagcacacgattgagcggcaaaggaaacattttcatc
aaaaaccttgatgcttcaatcgacaacaaggcattgttcgagacgttttcaagttttgga
accatcctctcatgcaaagttgcaatggacgtgactggccggtccaaggggtatggattt
gtccagtttgagaaggaggaatcggctcaagctgcaattgacaagctaaacgggatgcta
atgaacgacaagcaagtctttgtgggacacttcatcagacgtcaagaacgtgctcgtgat
gaaaacacccctacaccgcgtttcactaatgtgtacgtcaagaatctccccaaggagatt
ggtgaggacgagctacgaaaaacgtttggtaaatttggagtgatatcgagcgcggttgta
atgagggaccagagcgggaactcgaggtgttttgggtttgtgaactttgagtgtactgaa
gcagcggcttccgcggttgagaagatgaatggaattagcttaggggatgatgtgttgtac
gttgggagggctcagaagaagtctgagagagaagaagagttaagaaggaagtttgagcag
gagaggataaaccggtttgagaaatctcaaggagcgaatctgtatttgaagaatcttgat
gatagcgtcgatgatgagaaactcaaggagatgttctctgaatatggaaatgtaacatct
tccaaggttatgcttaatccacaaggattgagcagaggatttggttttgttgcttattct
aatcctgaagaagctttaagagcactgagtgaaatgaatgggaagatgataggaaagaaa
ccactatacatagctcttgcgcagcgcaaagaagatagacgagcacacttacaagcgcta
ttttcacagataagagcaccagggccaatgtcggggttccatcacccgccaggtggacca
atgtcgggtccaccccagcacatgtacgtaggccagaacggagcaagtctggtcccgtcc
cagcccattggatatggattccagcctcagttcatgcccgggatgcgtccaggttctggc
ccgggcaacttcgtcatgccttatcctcttcagagacaacctcaaaccggtcctcgtatg
ggattcaggcgtggtgctactaacatgcaacaccacatccaacaacaacaacttatgaac
cgtaacccgaccccgggaatgagatatatgaacggtgcgggtaacgggaggaacggaatg
gattcgagtgttccgcaaggaatcttgcctccaatcatgcctttgccaatagatgcttct
tcaatttctcaccagaaagctcctctccttccaatatctaagctcacttcttctttagct
tctgctagtccagctgatcgcactcggatgcttggagagcaactttacccacttgtggaa
aggcacgaaccacttcacgtggctaaagtcacaggaatgttgttggagatggatcaagcc
gagatcctgcacttgatggagtcaccagaggcactcaagtctaaagtatctgaggctttg
gatgttctcaggctatctgttgatccacctgatcatgagcttggtttctctaccacctga
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