Arabidopsis lyrata (lyrate rockcress): 9326797
Help
Entry
9326797 CDS
T01578
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9326797
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
9326797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
TPR_DNAAF5
OAM_alpha
Motif
Other DBs
NCBI-GeneID:
9326797
NCBI-ProteinID:
XP_020866954
LinkDB
All DBs
Position
Unknown
AA seq
2590 aa
AA seq
DB search
MATPADSLAVKSLNSSKGKKRYAFKNFSERINDIDIKKKVFRSLDKVKAEPCQDSTFFKD
CLVELRELNTASDFILFYEEMLPFVQNLELILLQKEFLFSKLVSGLHMKARLSLDAFLRL
IAALSRDILEDFIPFLPRIVNSLVILLENGGQKDPDVIEQIFLSWSFIMRDLQKFLIRDI
EGILRDTLALRYYPQGYISDKMSDTMSFLLTSARDNQLKKGIKRILSEVADPLKKAGGVA
LLYSVMRGTSVSLHSKARKVLRFLLEDSTLSFCDNFPHGSDSTVEVVSLTLQRICEDFKA
EELSVMWNCLYKETEESIVNKKSAHLSRLLTVLTSAVRAEKGLKVYDYPYLVGLVSQIVS
TFMDSSATVVEGDNFSTALDKVLGLMLCAIDSPSAVSEMESIASQWAPIFSLQSSSLLSF
LWELLKKELLIVKAFTNNILSSINNMILGSSEDILPLLISLCEKQQASPDRVTIIGESFE
RIHEFLEENIKKIQTKIEITGLAQIDEAEFAAVWGAVNCFPYFKVDSSLLICFKNTLRQH
LAASVINTSSAPVLMWQSLLGAALGSCLKFCPTGKLIHSDLEEALSLAKCYKSCAQVLSP
VADYLDFVYRPIIANHDSCKACPDLQANKAQETFDVFSENLRHSNKDVRLQTIRILCHFE
TLSPNPSLEENPPKKKQKTEMIQKSSPKRNVLQLLLTVEKSPHTVSTETKLLSLITRIQE
DLSTCRIHEAYVPVVFNGMIGLFHSRYSKICVAASKCLAVLMKKHTAMVWNDFVCYLGQC
QQKFVAIHNHPECGKYSISEKYTDLMERFYIFLYPPSDSTSTAEVISMLLQTLQKSPTVA
QSRVSEILPLLLEFLGYNSENPERVGLFKGGACKGEEWKPLLIQWMILLKLMKNTGSSRT
SLFVNDVLQNRFLDDNDAKIQTNVLECLLEWNDDLRPHCLHLLNLIKPDKLREELTTWNL
SKDIEEARRPHLVSLVIRILMPKVRNLKNSASRKRTSIPHRKAILRFISQLDVNELSLFF
ALLIKPLNIIPEEAMDLFSSSGKSSVDCFQKLNFLKYLTLDTISTLSRKQKSGFLSVIQQ
IFEVFHESHVRPFLDFLMGCVVRLLAGTSLKQFKELRSLCLKIIAYVLHKYEDCNLGSEF
WDLFFSAVNPLIKSFKQEGSSSERPSSLFKCFFSMSKSCNLVTFLCREEFLIPDIFSILT
VTTASKDIKSYALKFIENLLRLDNELAEDEHMIKGFLDPYIEALTNSLHSLFLGDILKRK
SVKYHGNREIMILKLLSKHIRDGSHVTKYLDVLLSFLDKSVKDSDIHRKALLAIQDISLN
LGTESTSRIVKRLSPLLIDAENEVRLCICNLLESLAKVDPSLVHVANCVRDMNANSPMEV
DGLDYEKIIDAYGTIDADFFKKSSEQHVMLILSQSIYNISSEELTLKDSACNLLCTFIEF
SATVLCLEASAHSDIIKEVTKSDGSWTGDRVLWIINKFILKHIGDTINRRISSGKGEILL
IRKMVATLPDAGNLTAFRPLCSEDDEVDFFKNIFSIQAHRRARAVKRFTKVVKDSSLPEG
VVRRLLVSVFFNMLLDVQDEKGKNVQDACKEALASVSGHMSWKSYYALLNRCFHEMKEHT
KKRKILLQLSGLILNNFHFLKDGYTHEAAEIRSCVEKSLFPKIQMLIDSDSVNVDSYVAA
VKVLNLLPKEIRDPQLGSIVPKICSYLKDGLTSTRDVARKALAACVEELGLEYLQFVVKD
LRAILKRGSEVHVLGYTVNFILSKCLSNPNPTCGKLDHCLGDLLAVVETDILEDVYEQKE
ELKTAFKKKKETVKRKSPETLKIIAENITFRSNVLKLLSPVTAQLQRPLTPKLISKLKEM
LRCIAAGIEGNPSVDQRDLFCFIYERVVDGINNRNGLGDEAWKRKSRDLQVTAGSKSCPH
LITVFALDLLHNRLKQMDLNNNNEGLVSMLDPFVKLLAGCLSSKYEDVVSLSVRCFTPLS
KLQLRSFKSEADKVKTALLTIIAQSATSSSNPLLLSCLKLFTVLLESGKFTLSSWELKML
LQLPMLVDLESDSSEESSVTSLSLIKAILRRKLAVPNIHDIAGQVLGLMIKTHSDHTRKN
CKNLHVEILVHYTPSEKCLQLHVNILLKHLSYEKLTGRLAVLDMLEDLINNFSKPYPGKQ
SFLDQQSQNFFLQLARRLATDDAKKVLSKICHVIKLLIGRISKDQVDFSLEHCLVWYKHE
NSRAIAAQVLGLFIEAKEEIFRKHICNVLQEAKMILESTVLLQDTVEEGSNPFWKEAYHS
LVMIEKMLQQFPDLTFGKDFEDIWKMVFKLLLHRHQWLCTISCRLLNYYFKESGKSQKLV
ASSLLGKPSSLFRVAVSLCVQLEDQRSTCIKDITENIVFALSGLHSMIGQSDDEFCSSLD
DDEQVLFLNAFEELDSGKGRSNFLALTSGKRSENDARNVLIGSLLKRMGKLALDMDSLQM
GIVFNVYKAFASQLNQEECRLYAFRILLPLYKVCQGFTGKVITEELKQLAEEARDSIRDK
SLGSQMFVQVYSEIKKSLEAKREKRKREEKLMAVINPERNAKRKLKLAAKNKANKKRRIM
SNKMDRWARS
NT seq
7773 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccggctgattctctggctgtcaagtcgctcaacagctccaagggaaagaag
agatatgcgttcaagaatttctctgagagaatcaacgacattgatatcaagaaaaaagtc
tttaggagtctggataaggtgaaagctgagccttgtcaagattccacatttttcaaggac
tgtctcgtagaattgagggagctgaatacagcatcagattttattttgttttatgaagag
atgttgccgtttgttcagaatctggagttgattctcttgcaaaaggaatttctcttctca
aaacttgtctctggattacatatgaaagcaagattgtctctcgatgcctttctcaggttg
attgctgctttgtcgagagatatcctggaggactttattcccttccttccacgaattgtt
aattccttggtgattcttctggaaaatggtggtcagaaagatccagatgttattgagcag
attttcttgtcatggtctttcataatgagggaccttcagaaatttcttatacgtgacatc
gaaggtattctcagggatacattggcgttgaggtattaccctcagggctatatcagtgat
aaaatgtcagatacaatgtcatttttgttgacgagtgcacgggataatcaactaaagaaa
gggatcaagaggatcctttctgaagttgctgatccactgaaaaaagctggaggagtggct
ttactatattctgttatgaggggtacctctgtgagtctccattccaaagctcggaaggtt
ttgaggttcttgctggaagattcaacattatccttttgtgataattttcctcacggttct
gatagtacagtagaagttgtgagtttaactttgcaaagaatatgcgaggattttaaagca
gaagaattaagtgttatgtggaactgcttgtataaagaaacagaagaatcaatcgtaaac
aaaaaatcagctcatttaagccgactgttgactgtgcttacttcagctgttagggctgag
aaaggtctcaaggtttatgattacccgtatttggttggactcgtgagccagattgtgtca
acttttatggattcctctgccactgttgtagaaggggataacttctctactgctctcgat
aaagttctgggactgatgttatgcgccattgacagtcctagtgctgtcagtgaaatggaa
tccattgcttcgcaatgggcccccattttttccttgcagagttcaagtttgctgagtttt
ttgtgggagttgctaaagaaggaactgttaatagtgaaagcttttacaaataatatatta
agttcgatcaataatatgattttggggtcttcggaggacattcttcctctgttaatatca
ttgtgtgagaagcagcaagcaagtcccgacagggtgaccatcataggggaatcatttgag
agaattcatgagttcttggaagagaatattaagaaaattcaaacgaagatagagattaca
ggattagctcaaattgatgaggctgagtttgctgctgtttggggagctgtcaattgtttc
ccctattttaaagtggattcatcattactgatttgctttaagaatactctcagacagcat
ttggcagcctcagttataaacacttctagtgctccagtattgatgtggcagagcttactt
ggtgctgctttggggtcatgtctcaaattctgtcctactggaaaactcatccacagtgat
ttagaggaagctttgtctcttgctaaatgttacaagtcatgtgcacaagtgctgtctcct
gtggccgactatttggattttgtgtacaggcctataatagctaaccatgatagctgtaaa
gcatgtccagatctccaagcaaataaagctcaagagacgtttgacgtattttctgaaaat
ttacgtcactcaaacaaagatgtccgtcttcagactataaggattttgtgccattttgaa
actttgtctccgaatccatctttggaagagaatcctccaaagaagaaacagaaaactgaa
atgattcaaaagtcttctcctaaaaggaatgttcttcagttattgctcacagttgaaaag
tcccctcatacagtatcaactgaaacgaagttgctcagtttgattactagaatacaagag
gatctgtctacttgcaggatacatgaggcatatgtaccggtggtattcaatggaatgata
ggattatttcatagtcgttattctaaaatatgtgtggcagcatctaagtgccttgcggtt
cttatgaagaagcacacagcaatggtgtggaatgattttgtttgttatctgggtcagtgc
caacaaaaatttgtagcaatacataatcatcctgagtgtggaaagtacagcatctcagag
aagtatactgatctgatggagcgtttttatatatttctatatccaccatctgatagcaca
tctactgcagaagtgatatctatgttgctccagaccttacaaaaaagtcccactgttgct
cagtcgcgggtttctgaaattctccctctgttattagaatttcttggatacaacagcgaa
aatcccgagagggtcggattatttaagggcggagcttgtaaaggagaggagtggaagccg
ttacttatacaatggatgattttgctgaagttgatgaagaatacggggtcgtctcgtact
agtctatttgttaatgacgttctgcagaataggttccttgacgataatgatgctaaaata
caaacgaatgtcctagagtgccttctggagtggaatgatgacttacgcccacactgcttg
catttattgaatttgattaaaccagataaattgagagaagagctcacaacctggaactta
tccaaagacattgaagaagctcgcagacctcatctggtttctcttgtaattcgcattctt
atgccaaaagttaggaatttaaagaactcagcttcgcgtaagcgtacaagtattcctcac
cggaaggcgattcttcgctttatatctcagctggatgttaatgaactttccctgttcttt
gctttgttgattaagcctttgaacatcataccagaggaagccatggacttgtttagtagt
tcgggaaaaagttctgtggattgcttccaaaagttgaatttcctgaaatatctcactctt
gatactatatcgaccttatccaggaagcagaaatctgggtttctttctgttatccaacaa
atctttgaagtttttcatgaatcccatgtccgaccatttttagacttcctgatgggatgc
gttgtccggctattggctggcacttctttgaagcaatttaaagagttgagatccttatgt
ctgaagattattgcatatgttcttcacaagtacgaggattgcaatcttggctctgagttc
tgggacctcttcttttcagcagtgaatccgttaattaagagttttaagcaggaaggctct
agtagtgagagaccaagctcattgttcaaatgcttcttttcaatgagtaaaagctgcaat
ctcgtgaccttcttatgtcgggaggagtttcttattccagacattttttcaattctaaca
gtcactacagcttcaaaagatataaagtcttatgccttgaagttcatcgagaatctgctc
aggcttgacaatgagttggctgaggatgagcatatgatcaaagggttcttagatccatat
atagaggcactgactaacagcttgcattctctctttcttggggatattttgaaaaggaaa
tcagtcaagtatcatggaaatagagagattatgattctcaaactattgtcgaagcacata
cgagatgggtctcatgttacaaagtatttggatgtcttgctgtctttcttggataaaagt
gtgaaagattctgatattcatcgtaaggctttgctagccattcaggacatctcattgaac
cttgggactgagagtaccagcagaattgttaagagactgtctcctctgcttattgatgct
gaaaatgaagttagattatgcatttgtaatcttcttgaatctcttgcaaaagttgatccg
tctctggttcatgtggcaaattgtgtccgtgatatgaatgccaactcacccatggaagtt
gatggccttgactatgaaaagataattgatgcttatgggacgattgatgcagatttcttt
aaaaaatcctcggagcagcacgtgatgctcatactctcacagagcatatacaacatatca
tcagaagagcttacgttaaaggatagcgcatgtaacctcttgtgtactttcattgaattt
tcagccacagtactttgcctagaggcttccgctcactctgacattatcaaagaggttaca
aaatctgatggaagctggactggagatcgtgtattgtggattataaataagtttattttg
aaacacattggagatacaataaacagaagaatttctagtggaaagggggagattcttttg
atacgcaaaatggtggcaacacttccagatgccggaaatcttactgcattcagaccttta
tgctcagaagacgatgaagtggatttctttaaaaacatttttagcattcaggcacaccgt
agagcaagggcagttaaacgtttcacaaaggtggtcaaagatagcagtctgcctgaggga
gtagtgagaagacttttggtctcagtttttttcaacatgttgcttgatgtacaagatgaa
aaagggaaaaatgtccaagatgcatgcaaagaagcccttgcatctgtatctggtcatatg
agttggaagtcgtactacgccctattgaatcggtgtttccatgagatgaaagagcatacc
aaaaagagaaaaattctgctgcagcttagtggcttgattttaaataacttccatttctta
aaagatggttacacacatgaggctgcggagattaggagttgcgttgagaagagccttttt
ccgaagatacagatgctgattgattctgacagtgttaatgttgacagctacgtggctgca
gtgaaggttctaaaccttctgcccaaagaaataagggacccgcagctaggctctatagtt
cctaaaatttgcagttatttgaaggatgggttgacgagcacacgtgatgtagcaagaaag
gctctggctgcttgtgtggaggaactcgggctagagtacctgcaatttgttgtaaaagat
ttacgtgctatattaaaacgaggatctgaggtgcatgtgctaggatacactgtcaacttt
atcttatcaaagtgcttgtccaatcctaatcctacgtgtgggaagttggatcattgtttg
ggagatctccttgcagtggtggaaaccgatatccttgaagacgtttatgaacagaaagag
gagttgaaaaccgcgttcaagaagaagaaagaaacagtaaaacgcaagtcacctgagact
ctgaaaatcattgctgaaaatataacgttcagaagtaatgtgttgaagttactttctccg
gtcacagctcagctgcagaggcctttgactccaaagttaatatcaaaactaaaggagatg
ttaagatgtattgcagctggtattgaaggcaatccatctgttgatcaaagagatcttttt
tgttttatatatgaacgtgttgtggatggtattaacaacaggaatggtcttggagatgaa
gcatggaaaaggaaatcaagagatctgcaagtgacagctggttctaagtcatgtccacat
cttataaccgtgtttgctctggacttattgcacaacagactgaaacaaatggacctgaac
aataataacgaagggctggtgtcgatgttggatccttttgtcaaactacttgctgggtgc
ttgagttctaagtatgaagatgttgtatctttatctgttagatgtttcactccactgtca
aagttgcagctgcgctccttcaaatctgaagcagataaagtgaagacagcactgctaact
attatcgctcagtctgcaacgagttccagtaatcctcttttgctgtcatgccttaagctg
tttacagttcttctcgaatcaggaaaattcactttatcatcttgggagttgaaaatgttg
cttcaacttcccatgttagttgatctggaatcggattcatctgaggagtcatctgttact
tctctgtcacttatcaaggccattttgagaaggaagcttgcagtcccaaacatacatgat
atagcaggtcaggtattagggttgatgataaagactcactcagaccatacacgcaagaat
tgtaaaaatttacatgtggaaattttggtccattatacaccttctgagaaatgcctacaa
ctacatgttaacattttgctgaaacatctgagctatgaaaagttaactggaagactagca
gttcttgacatgcttgaagatcttatcaataatttctcgaaaccttatcctggcaagcag
tcgtttcttgaccagcagtcccaaaacttctttcttcagcttgctcgtcgtttggcaact
gatgatgctaaaaaagtactatcaaagatttgtcatgtgataaaacttctgattggtcgc
atcagtaaagatcaagttgatttcagcctcgagcactgtctggtttggtataagcatgag
aattcacgtgctatagctgcacaggtactgggattattcatcgaagccaaggaggaaata
tttcggaagcatatctgcaatgtattgcaggaggctaaaatgattttggagtctactgta
ctgttgcaagatacggttgaggaaggcagtaatcctttctggaaggaagcttatcattca
cttgttatgatagagaagatgctccagcagtttcctgatttaacttttggaaaagatttt
gaggatatttggaaaatggtgtttaagttgttgttgcaccgacaccaatggttgtgtact
atatcctgccggctcttgaattattatttcaaggaatcaggaaaatctcagaaactagta
gctagttctcttctcgggaagccaagtagcctgttcagggtggctgtttctctttgtgtc
caattagaggatcaacgcagcacatgcattaaagacattacagaaaatattgtttttgct
ctctctggtcttcattctatgattggacaatctgatgatgagttctgttccagtcttgac
gatgatgagcaagtgttgttcctcaatgcctttgaagagcttgattcagggaaaggaagg
tctaattttctggctcttacctcaggaaaacgcagtgaaaacgatgcgagaaatgtattg
attggaagtttgctcaaaagaatggggaagctcgctcttgacatggactctcttcagatg
ggaattgtgttcaacgtctacaaagcgtttgcttcacaattgaatcaagaagagtgtcgc
ttatatgccttcagaatcctgctcccgttgtacaaagtttgccaaggatttactggaaaa
gtcatcacagaagagttgaaacagctagcagaagaggcgagagacagtataagggacaag
agcttaggcagccaaatgtttgtgcaagtttacagcgaaatcaaaaagagtttggaagcg
aaaagggagaagaggaaacgagaggagaagctaatggcggtgataaaccctgagagaaac
gcaaagagaaaactaaagttagctgcaaagaacaaggctaacaagaaaagaaggattatg
agcaataaaatggataggtgggctcgctcttga
DBGET
integrated database retrieval system
