Arabidopsis lyrata (lyrate rockcress): 9326813
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Entry
9326813 CDS
T01578
Name
(RefSeq) probable CCR4-associated factor 1 homolog 5
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9326813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9326813
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9326813
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9326813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
9326813
NCBI-ProteinID:
XP_002893492
UniProt:
D7KBV0
LinkDB
All DBs
Position
Unknown
AA seq
322 aa
AA seq
DB search
MKQSSSCEVWRWNKEAEMNAMSDCLKHCSFIAIDTEFPGCLKETPMEASEETRYRNMKYN
VENTNLIQLGLTIFAGEFSKTWEINFSDFNEWKDLKNEKSIAFLKSNGLDLAKIREEGIG
IEEFFKEFTQMILKEKEKKMTWVTFQGSYDKAYLVKGLTGGKPLPETLEEFDETVERLLG
ERVYDVKKMAGLCRGLSSRFGLQRIADAFQMSRVGMAHHAGSDSELTARVFTKLTFDLCK
RNQSLRPDDLLYQQDLMMTLDLHNRKLRLRPDDLLYQQDLLMTTCYLPQPPPIPRPVMFA
AHPNPYFGGGYYGMPVRGMNYV
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaagtagtagttgtgaagtttggagatggaacaaggaagcagagatgaatgcg
atgagcgattgtttgaaacattgtagtttcatcgctatagatacagagtttccgggatgt
ttaaaagagactcccatggaagctagtgaggaaactcgttacagaaacatgaagtacaat
gtcgaaaacaccaatctcattcagttaggtttgacaatattcgctggagaattttctaaa
acttgggaaattaacttctcagatttcaacgagtggaaggacttgaagaacgagaaatct
atcgcgtttctgaaaagtaatggtctggatctggcgaagatcagagaggaaggaattgga
atcgaagaattcttcaaggagtttactcagatgattctcaaggagaaggagaagaagatg
acttgggtgacttttcaaggctcgtacgacaaggcttatctagtgaaaggcttaaccgga
ggaaaaccattgccggagactttggaagagtttgacgaaacggttgagaggcttttggga
gaacgtgtttatgatgtgaagaaaatggctggattatgcagaggactaagtagccgtttc
ggactgcagagaatagcagatgcgtttcagatgagccgtgttggaatggctcatcacgct
ggctcagacagtgaattaacggctcgtgtcttcaccaagttgactttcgatttgtgcaag
agaaaccagagtctaagacctgatgatctgctatatcaacaagaccttatgatgacttta
gatttgcacaatagaaagctgcgtctaagacctgatgatctgctatatcaacaagacctt
ctgatgactacatgctatctcccacagccgccacctataccgagaccggtgatgtttgct
gctcaccccaacccgtattttggtggtggttactatgggatgccggtccgaggaatgaac
tatgtatga
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integrated database retrieval system
