Arabidopsis lyrata (lyrate rockcress): 9327004
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Entry
9327004 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9327004
03420 Nucleotide excision repair
9327004
03430 Mismatch repair
9327004
03440 Homologous recombination
9327004
03460 Fanconi anemia pathway
9327004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
9327004
03032 DNA replication proteins [BR:
aly03032
]
9327004
03400 DNA repair and recombination proteins [BR:
aly03400
]
9327004
Transcription factors [BR:
aly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
9327004
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
9327004
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
9327004
MMR (mismatch excision repair)
9327004
DSBR (double strand breaks repair)
HR (homologous recombination)
9327004
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Fer4_9
AIR2-like_ZnK4
Fer4_10
RADX
Motif
Other DBs
NCBI-GeneID:
9327004
NCBI-ProteinID:
XP_020867528
LinkDB
All DBs
Position
Unknown
AA seq
833 aa
AA seq
DB search
MAVNLTAGAITKILNGEVSSEIDLMPVLQVTELKMIQSNRYKFLLSDGIHLQAGMLNTTL
NSLVIQGSIQLGSIVRLTHYVCSLIQGRRIVIIMQLEVIVAKCDIIGTPNEPGQRGGAAV
PVNTQSNGGFDQQQARRSDVNGGRYGVSANSPQPLVGGLNSSDAGRYGVSASLAQPQVWS
NSSDAGRYGVSAAASPQPQVSQRYGTGSGYPETSPSTRPYVSSNAGYGGSRQEQPRAPPA
TTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRIIPIAALNPYQGRWTIKVRVSSKAEL
RRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDQIVVGNVYLISRGNLKPAQKN
YNHLPNDYEIHLDSASTIQRCEDDGTIPRNQFHFRNISDIENMESNSMTDLIGIVSSIGT
TVPIMRKNGTEVDKRALQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVFPVLALKAG
RIGEFNGKQVSTIGSSQFFVEPDFPEARELRQWYEREGRNANFTSISREFSGVGRQEVRK
VITQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWR
CEKCDKCVDECDYRYILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVKYENQEEEK
FEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYASNTRCMLEAMDKLKIGD
ANSLPINTESSNYRSDAVNSGIGTSGTRDTASVDARREFGLPAANQVGQYGNQYSSGARS
LGGITSCNACGSNSHVSANCPSLMSEPQGQYMNGTPGRYNAGGGMPRQNVGSY
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatttgacggccggagcgataacgaagatattgaatggagaagtgtcgagt
gagatagatttgatgccagtgctacaagtaacggaattgaagatgattcaaagcaatcga
tataagtttttgttatcagatgggattcacttgcaagcaggaatgcttaatactacattg
aacagtttagtgattcaaggcagtattcaattgggttcgattgttagactcactcactat
gtctgcagtctcatccagggtcgaaggattgttataattatgcaattggaggttattgtg
gcgaaatgtgatataattggaactcctaatgaacctgggcaacgcggtggagcggcggtt
cctgttaacacacaaagcaatggtggttttgaccagcaacaagctagaaggagtgatgtc
aatggtgggagatacggtgtatctgctaattcacctcagcctctagttggtggtcttaac
agttccgacgctgggagatatggtgtatcggctagtttggctcagcctcaagtttggtct
aacagttccgatgctgggagatatggtgtatcggctgctgcttcacctcaacctcaagtt
agtcaaagatatggtactggttctggttatccggaaacatcaccttccaccagaccgtat
gtgagctcaaatgcaggttatggagggtctaggcaggagcaacctcgggctcctcctgca
acaaccgcttattctcgtccagttcagtcagcttatcagccacaacaaccaccgatgtat
gttaataggggacctgtggctaggaacgaagctcctccgaggataattccgattgctgct
cttaatccttaccagggtcggtggaccatcaaggtcagggtctcgagtaaggcagaactg
agacggtttaataatccgcgtggggaagggaaattgttcagttttgatctccttgatgct
gatggtggagaaatacgggtgacttgttttaatgatgcggttgatcaattctttgaccag
attgtagttggtaatgtttatctgatatcaaggggaaatttgaagcctgcccagaagaac
tataatcatcttcccaatgattatgaaatacatttggattctgcatcaacgatacagcgc
tgtgaggatgatggtaccattccacgcaatcagttccattttcgtaacataagtgatatt
gaaaacatggagagcaacagcatgactgatctaattggtattgtttcgtccatcggtacc
acagtaccaattatgcggaaaaacggaactgaggtagataaaagggcacttcagttgaag
gatatgtcaggccgtagtgttgaggtaaccatgtggggtaatttctgcagcgcagaagga
cagcaattgcaaaatctttgtgattctggggtattcccggttcttgctttgaaagcgggc
aggatcggtgaattcaacgggaagcaagtgagcaccattggatcaagtcaattcttcgta
gagccagatttccctgaagccagagaattaaggcaatggtatgagagagaaggaaggaat
gctaattttacctccatatctagagagttttccggtgttggcagacaagaggttcgcaag
gtaattactcagatcaaggacgagaagctagggacctcagagaagccggactggatcaca
gtctgtgccaccatttcattcatgaaggttgaaaatttctgctatacggcttgtcctatc
atgaatggagatcgtccatgcagcaaaaaagtcacaaataacggagatgggacatggcgt
tgtgagaagtgtgacaaatgcgtggatgaatgtgactacaggtatatattgcagatccag
ttacaggaccatacaggcctaacctgggccacagcattccaggaagctggtgaagagata
atgggaatgtctgcaaaagatttgtattatgtgaagtatgaaaatcaggaggaggagaaa
tttgaagatatcatccgcagtgtcgcttttaccaagtacattttcaagctgaagattaaa
gaagaaacttatagcgacgagcaacgggttaaagcaacagttgtcaaagctgaaaagctg
aactatgcttcaaataccaggtgcatgctagaggcaatggataaactcaagataggagat
gcaaattctctgcctataaatacagagagttccaactacaggtctgatgcagttaattcc
ggtattggaacctcaggaactagagacactgcgtcagtggatgcacgcagagaattcgga
ttacctgcagcaaaccaagtgggtcaatatggaaatcagtacagtagtggtgcaaggtct
cttggcggtattactagctgcaacgcatgtggcagcaacagccatgtttcggcaaactgc
ccaagccttatgagtgagccacaaggacaatacatgaatggcacaccaggaagatacaat
gcaggaggaggtatgccaaggcaaaatgttggcagctactga
DBGET
integrated database retrieval system
