Arabidopsis lyrata (lyrate rockcress): 9327212
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Entry
9327212 CDS
T01578
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34 isoform X1
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9327212
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
9327212
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
9327212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
RQC
ResIII
Motif
Other DBs
NCBI-GeneID:
9327212
NCBI-ProteinID:
XP_002893846
UniProt:
D7KL19
LinkDB
All DBs
Position
Unknown
AA seq
704 aa
AA seq
DB search
MESEAIQEELQNLDVELKDVQGQISALIEHQDRLYERKSELKTLLKALATSGSPVASSGS
NAIENWSEAFEWDSRADDVRFNVFGISKYRANQKEIINAIMAGRDVLVIMAAGGGKSLCY
QLPAILRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEHD
LKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKT
QFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKVVVDE
IAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSK
NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSAD
VPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALSSEV
KEVDVSDLSKLVVSMVQETQSKDQRVTMLQLGDKLRNKHKDLSAELKRDEIEHLVIKLIV
DSVLKEEFQHTPYSTNAYVTMGPLANQLLQGRKTIKMETSSRQTKKPKRSLSFSGLELNL
DELRKEISAADGSILPHTVLSTQQISLISSQKPVSLQELESIIGKLKTEKYGDRILEEVM
RHEAVSEQLVEDPTKEETCNSRSRKRAKTQKDAILVESSGEEEA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaagcgattcaagaggagcttcagaatttagacgtcgagttaaaggatgtt
caaggtcagataagtgctttgattgagcatcaagatagattatacgagaggaagtctgag
ttaaagacattgttgaaagcattagctacatcaggaagtcctgttgcatctagtggctct
aatgctatagagaattggtctgaggcatttgagtgggattctcgtgctgatgatgttcgg
ttcaacgttttcggtatatccaagtatagggctaaccagaaggaaattattaacgctata
atggcgggaagagatgttctggtgatcatggcagcaggtggggggaagagtctttgctat
caacttcccgctatacttcgtggtgggacaactcttgttgtcagtcctttactttcactg
attcaggatcaggttatgggtttggctgctctaggaatctcagcctacatgctgacttct
acttctggcaaggaaaatgagaaatttgtgtacaaggcacttgaaaagggtgaacatgac
ctcaagatactttatgtaacaccagagaaggtatcaaagagcaaaagattcatgtcgaag
cttgaaaagtgtcacaatgctggtcgcctctctcttatatcaattgatgaggctcattgt
tgtagtcagtggggtcatgattttcgccctgattacaagaacttgagcatcctgaaaacc
cagtttcccaaagttcccatggtggctttaactgcaactgctacacagaaagttcaaaat
gatctgatagagatgctgcatattcctaaatgcgtcaaatttgttagcagtgttaacagg
ccaaatctcttttactcggtccgagaaaagtcggcagttggtaaagtggtggttgatgaa
attgcagaattcatacgggaatcatactctaacaatgaatctggaatagtctattgtttc
tcccggaaggagtgtgaacagattgcaggtgatttacgagagagagggatctctgctgat
tattaccacgcagacatggatgcaaatatgcgcgaaaaagttcatatgcgatggagcaag
aacaagttgcaggtcattgttggaacagttgcctttggcatgggaatcaacaagcctgat
gtcaggtttgtcatccaccacagtttgagcaaatcaatggagacttactaccaggagagt
ggccgcgctggtcgtgatggccttccatccgagtgcatcctcttttttcgttcggctgat
gttcccaggcagagttccatggtcttctacgagtattctggtctgcaaaatctctacgat
atagtaagatattgtcagtctaaaacaaaatgtcgtcgtagcgcattttttcgtcatttt
ggggaaccatcccaagattgcaatggaatgtgtgacaactgtgccttatcaagtgaggtc
aaggaagttgatgtatcggacctgtctaagctcgtggtttctatggtgcaagaaacgcaa
tccaaggatcaaagagtgacgatgttacagttgggtgacaaactcagaaataagcacaag
gatctaagtgctgagttaaagagagacgagatagaacatctcgtgataaaactgattgtt
gactcagtattgaaagaagaattccagcacacaccatactcgacaaatgcttatgtaaca
atgggaccattggccaaccaattgttgcaaggaagaaagacgatcaaaatggaaacctct
agcaggcaaaccaagaaaccgaaaagaagtctttcattttccgggttggaacttaacctc
gacgagctacgtaaagagatatccgcagctgatggaagcatactccctcacacggttctc
tcaactcagcagattagcttgataagttcccaaaaaccagtttcattacaagagttggag
agtattataggaaaactgaaaacagaaaagtatggagacaggattctagaagaagtgatg
agacacgaggcagtctctgaacaacttgttgaagatccaacaaaggaagagacatgtaat
agcagatcaagaaagagagctaagacacagaaggatgctatattggtagagagcagtgga
gaagaagaagcttga
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integrated database retrieval system
