Arabidopsis lyrata (lyrate rockcress): 9327366
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Entry
9327366 CDS
T01578
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9327366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9327366
Spliceosome [BR:
aly03041
]
Complex A
U1 snRNP components
U1 related factors
9327366
Complex B
9327366
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
Motif
Other DBs
NCBI-GeneID:
9327366
NCBI-ProteinID:
XP_020869156
LinkDB
All DBs
Position
Unknown
AA seq
966 aa
AA seq
DB search
MANNPPQSSGAQFRPMAPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLF
PVRPGQPVHITSSSQAVLVPYIQTNKILTSGSTQPQPNAPQMTGFATSGPPFSSPYTFVP
SSYPQQQPTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSSVQQTGQQTPVAVSTDPG
NLTPQSASDWQEHTSVDGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTTPEGK
KYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSNHAASSSDLAVSTVTS
VVPSTSSALPGHSSSPIQAGLAVPVTRPPSVAPVTPTSAATSDTEASAIKPDNLPSRGAD
DSNDGATAQNNEAENKEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNV
HSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVK
MLEECEELSSSMKWSKAMSLFENDERFKAVDRPRDREDLFDNYVVELERKEREKAAEEHR
QHMAEYRKFLETCDYIKAGTQWRKIQERLEDDERCSCLEKIDRLIGFEEYMLDLEKEEEE
QKRVEKEHVRRAERKNRDALRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTS
GSTPKDLFEDITEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSSQPIS
DINLKLIYDDLVGRAKEKEEKEARKLQRLAEEFTNLLHTFKEITAASNWEDSKQLLEESQ
EYRSIGDESVSRGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREK
EREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNSDEDVSSDRD
DRDESKKSSRKHGNDRKKSRKHANSPESDSENRHKRQKKEQREGSRRSGHDELEDGEVGE
DGEIRH
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataatcctccgcagtcttctggtgcccagtttcggccgatggctcctgggcag
cagggtcagcattttgttcctgcagcttcacaaccttttcacccttatggacatgtacct
ccaaatgttcaaagtcagcctccgcagtattctcagccgatacagcagcagcagctcttt
cctgtgagaccaggccagcctgtgcatattacatcatcctcacaggctgtattagttccg
tatattcaaacgaacaagattctcacttctggatctactcaaccacagccaaatgcacct
caaatgacgggctttgctacatctggacctccattttcttctccatatacttttgtacca
tcatcttatcctcagcaacaaccaacatccttggtccaaccaaattctcagatgcatgta
gccggcgtccctccagcagcaaacacttggcctgttcctgtaaatcaaagtacctcactt
gtttcttctgtgcagcagactgggcaacaaacaccagtcgcagtttccacagacccagga
aacttgactccgcaatctgcatctgactggcaggagcatacatctgttgatgggagaaaa
tattattataacaagcggacgaaacaatcaaattgggaaaaacctcttgaactgatgaca
ccacttgagagggctgatgcatccactgtatggaaggaatttacaacacctgaaggaaag
aaatattattataacaaggttacaaaggagtctaagtggacaattccggaagatttaaag
ttagctcgggaacaagcccaactagctagtgaaaaaacgtccctttcagaagctggatct
acccctctgtccaaccatgctgcatcctcgtctgatctagcagttagcactgtgacttct
gttgttcccagcacatcttcagcacttcctggacattcttcaagccctattcaagcgggt
ttggctgtacctgtcactcgtcctccctctgttgctcctgttactccaacatctgctgca
actagtgatactgaggcttctgcaataaaacccgataatttaccttctcggggggcagat
gattcaaatgatggagctacagcacaaaacaatgaggctgagaataaggaaatgtctgtg
aatggaaaagccaatttgtcacctgctggtgacaaagcaaatgtcgaggaacctatggta
tatgctactaagcaggaggccaaagctgctttcaagtctcttttggaatctgtaaatgtt
cattccgactggacatgggaacagacattgaaagagattgttcacgataaaagatatggt
gctttgaggacactcggtgagcggaaacaagcgtttaacgagtatcttggtcaaaggaaa
aaagtggaagctgaggaaagacgaaggaggcagaagaaagctagggaagaatttgtcaag
atgctagaggagtgtgaagaactttcatcatccatgaaatggagcaaagcaatgagtttg
tttgaaaatgatgagcgctttaaagctgttgatcgtcctagggatcgtgaagatcttttt
gacaattacgttgtggaacttgagaggaaggaaagagaaaaggcagcggaggaacatcgg
cagcatatggcagagtatcggaagtttcttgaaacctgtgactatatcaaagctggtaca
caatggcgcaaaattcaagagagactggaggatgacgaaagatgctcatgtctcgaaaag
atagatcgtctgattggttttgaggaatacatgcttgacttagagaaggaagaggaggag
cagaagagagtagagaaagaacatgtacggcgggccgagagaaaaaaccgtgatgcactt
cgtacacttttggaagaacatgtcgctgctggcattcttacagccaagacgtactggttg
gattattgcattgagttaaaagacttgccccaataccaagctgttgcatctaatacatct
ggctcaactccgaaagacttgtttgaagatatcacagaagaattagagaaacagtaccat
gaggacaagagttacgtaaaggatgctatgaagtcaaggaagatttccatggtctcctcg
tggctatttgaagattttaaatctgctatttcagaagatctcagttctcaaccgatatca
gatataaatttaaagcttatatatgatgacttggttgggagagcgaaggaaaaagaagaa
aaagaggctagaaagcttcagcgtctggctgaagaatttaccaatctgttgcacactttc
aaggaaataaccgcagcttcgaattgggaagatagcaaacaactattagaagaaagtcaa
gagtacagatcgattggagatgaaagtgttagccgagggttatttgaggaatacataacg
agtttacaagaaaaggcaaaggagaaggagcgtaagcgtgatgaggaaaaggttagaaaa
gagaaggaaagggacgagaaagagaaacggaaagacaaggataaggagagaagggaaaag
gaaagagaacgtgaaaaagagaagggaaaagagaggagtaaacgggaagaatcagatggt
gagactgctatggatgtgagcgaaggtcacaaagacgagaaaagaaagggaaaagatcga
gacagaaaacatcggagacggcatcacaattctgatgaagatgtcagttctgatagggat
gacagagatgagtcgaagaagtcctctcgtaaacatggtaatgatcgtaaaaaatcaaga
aagcacgcaaactcacctgaatcagacagtgaaaaccggcataaaagacagaagaaggaa
cagcgggaaggtagtcgtcgaagtggtcatgacgagctagaggatggagaagttggggag
gatggtgaaatccgacattaa
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