Arabidopsis lyrata (lyrate rockcress): 9327510
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Entry
9327510 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9327510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9327510
03012 Translation factors [BR:
aly03012
]
9327510
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9327510
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9327510
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9327510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
ATPase
nSTAND3
T2SSE
AAA_16
NACHT
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
9327510
NCBI-ProteinID:
XP_002894123
UniProt:
D7KD38
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MHFYSAIFRGHIRPNAVVGAASIFIQHNSVQLHRSPKLLLKPSSVVRSLHCRRSGGLVTH
SQRSRVLSVKAGRGDASSSTLGLEWRAANLPYFQRQNSGYGRIAYNDYESSDESDRDVGS
SQSQQMAGSTLDNIDQWRLKLTMLLRNKEDQEVVSRERKDRRDFDHISAMATRMGLHSRQ
YSKIVVISKAPLPNYRPDLDDKRPQREVVLPFGLQSEVDTHLHAFLDQKKTLLPEMSRPN
SNGSLATDYGNYEKPETVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEFRKTLP
AYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRIS
AISVSERVAAERGEQIGDSVGYKVRLEGMTGRDTRLLFCTTGVLLRRLLVDRSLKGVTHV
VVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTY
PVRAHFLEDYLETSGYRLTTYNQIDDYGEEKTWKMQKQAQFKKRKSPISSAVEDALEAAD
FKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQLEA
HSLLGDPNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQP
ELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTAL
GKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFS
GRDYSDHLTLVRAYSGWKDAERTHSGYEYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI
DNIEGCSKLSHDEHLVRAIICAGLFPGICSVVNKEKSITLKTMEDGQVLLYSSSVNGNVP
RIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFGDKISSGGFDGHLKMLGGYLEFFMKP
TLAYTYLSLKRELDELIQNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVYGRKALSP
TPTKKLKEVGTQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKNNQFRAMVTFNGLDF
MGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSILLKKNKSKKTAQASTKWG
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttactctgcaattttccgaggacatatcagacctaacgccgtcgtcggtgct
gcctccatttttattcaacataactccgttcagcttcatcggagccctaagttgttgtta
aaaccctcctctgtggttaggtctcttcactgccggaggtcaggtggattggttacgcat
tctcagaggtcaagggtcttgtctgtgaaagcaggtcgtggtgatgcttcttcttcgact
cttggattggagtggagagcagctaatttaccatattttcagaggcaaaactctggctat
ggacgtattgcttacaatgactatgaatcaagtgatgagtcagacagagatgttgggtct
tctcagtctcagcaaatggcgggttcgactcttgataacattgatcaatggagacttaaa
ctaactatgcttcttcggaacaaagaagaccaagaagttgtttcaagggagagaaaagat
cggcgtgattttgatcatatctcggctatggctaccagaatgggattacacagccgtcag
tattcgaagattgttgtcattagtaaagctcctttgccaaattatagacctgatcttgat
gataaacgcccacaaagagaggtggttttgccgtttggtcttcaaagcgaagtagatacc
catctacatgctttcctcgatcagaaaaaaacattgcttccagagatgtccaggccaaat
agtaatggaagtttagcaactgattatggaaactatgagaaaccagagaccgtgatgcaa
aatagtcttgccagggaaagaatactccgtccaagaagcttacaactgaggagcaagcaa
cagcaatgggtggattctccagaaggccagaaaatggtagagtttcgcaaaacccttcct
gcttacaaagagaaagacgcactactgaaagccattgcagcaaaccaggtcgtagtggtt
tctggagaaactggttgtggtaaaacaacacagcttccccagtacatattagaatctgag
attgaggctgcccgtggagcttcatgcagcatcatatgtacccagcctagaagaatatct
gctatatctgtttctgaacgagttgctgcagaacgtggagaacaaatcggagactccgtt
ggctacaaagtgcggcttgaaggaatgacagggagagatacacgtcttcttttttgtaca
actggtgttttactcagaaggttacttgttgatcgtagcctgaaaggtgtgactcatgtc
gtagttgatgagattcatgaacgtgggatgaatgaagatttcctgcttattgtcctgaaa
gatctccttcctcgtcgacctgacctaaagttgattttaatgagtgctactttgaacgct
gagctcttttcttcttattttggtggtgcaccagccatgcatataccaggttttacatac
cctgtccgagcccatttcttggaggattatcttgagacgagtgggtacaggctgacaaca
tataatcaaattgatgattatggtgaggaaaagacatggaagatgcaaaaacaagctcag
ttcaagaaaagaaaatcccctatatcctctgctgttgaggatgctcttgaagctgcagac
ttcaaaggatacaactttcgtactagagattctttgtcatgctggagtcctgattcgata
ggctttaacctcattgagaatgtgctttgccacatcgtcaaaggagagagacctggtgct
gttttggtattcatgaccggttgggacgatataaactccttgaagaatcagcttgaagct
cattctcttctaggagacccgaacaaagttttgttacttgcctgtcatggatccatggcc
agctctgagcagaggctgatttttgatagacctccagaaggaattaggaaaatagtgctg
gccaccaatatggctgagacaagtatcaccatcaatgatgttgtatatgtgattgattgt
ggtaaagcaaaagaaacgtcttatgatgcgcttaacaataccccttgtctgcttccatct
tggatttcaaaggcagctgctcgacaaagaagaggaagagctggtcgtgttatgcctgga
gaatgttatcacctctatcctagatgtgtctatgatgcttttgctgactaccagcagccg
gaacttctaaggacgccgttgcagtctctgtgtctacaaattaaaagcttaggacttgga
agcatttcagagttcctctccagggcgttgcaacctcctgaagcattatcggtccaaaat
gctgttgagtatctaaaaatcattggggctcttgatgacgatgaaaatttaacagcttta
gggaaaaatctgtcaatgcttcctgtggagcctaaacttgggaaaatgcttattttaggg
gctatcttcaactgtttagatccagtaatgacagttgttgctggtcttagtgtcagagac
ccattccttatgccatttgacaaaaaagatctagcagaaacagcaaggtccaagttctct
ggccgtgattacagtgatcatttgacattggttcgagcatacagtggttggaaagatgct
gaaagaacacattctggttacgaatattgctggaagaactttctctcttctcaaactctt
aaggccatggactctatgcggaaacaattcttcaatctcctcaaggaggcttctctgatt
gataacattgaaggttgcagtaagctaagtcatgatgaacatcttgtccgcgcaatcatc
tgtgctggcctgttccctggaatttgttctgttgttaataaggaaaagtcaattacgctc
aagacaatggaagatgggcaagtgcttctatactcgagttctgtgaatggcaatgtacca
aggattcccttcccttggctagtcttcaacgacaaagtgaaagtcaattctgtgtttctg
cgggactccactgctgtatctgactctgtgcttcttttgtttggagataaaatctcttct
ggtggatttgatggtcatctcaaaatgcttggaggatatctagagtttttcatgaaacct
actttagcatatacgtacctttcgttaaaaagagagctcgacgaacttattcagaataag
cttgtgaatccaaaactagatattcaactatacgacaaacttatgactgccattagatta
cttgtgtcagaggaccaatgtgagggcagattcgtctatggccggaaagctctaagccct
acaccaacaaagaagttaaaagaagtagggactcagctgcagaacagtggcggtgaaaac
aacaagaaccaacttcagacattgcttgcccgagcaggacacggatcacctgtgtacaag
acaagacagcttaagaacaaccagttccgcgctatggttaccttcaatggattggatttc
atggggaagccatgtggtagtaagaaaaatgcagagaaggatgcagctcatgaagctttg
ttgtggttacaaggcgagtccaagtcgagtctgaatgatcttaaccacatgtcaatactc
ttaaagaagaacaaaagtaaaaaaacggcgcaggcatcaactaaatggggttaa
DBGET
integrated database retrieval system
