Arabidopsis lyrata (lyrate rockcress): 9327698
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Entry
9327698 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9327698
09122 Translation
03013 Nucleocytoplasmic transport
9327698
03015 mRNA surveillance pathway
9327698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9327698
03041 Spliceosome [BR:
aly03041
]
9327698
03009 Ribosome biogenesis [BR:
aly03009
]
9327698
03012 Translation factors [BR:
aly03012
]
9327698
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9327698
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9327698
mRNA cycle factors
Stress granule specific factors
9327698
Spliceosome [BR:
aly03041
]
Complex C
Other components
EJC/TREX
9327698
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
Helicases
9327698
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
eIF-4
9327698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Helicase_RecD
CbiA
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
9327698
NCBI-ProteinID:
XP_020867311
LinkDB
All DBs
Position
Unknown
AA seq
392 aa
AA seq
DB search
MEGVLDDENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR
DVIAQAQSGTGKTSMIAISVCQIVNTSSRKVQALVLSPSRELASQTEKTIQVIGAHTNIQ
AHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKG
LKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYV
DVDKEEWKFDTLCDLYGRLIINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKER
DEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGV
AINFVKSSDMKDLKDIERHYGTKIREMPADLV
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagttttagatgacgagaatttggtattcgaaaccaccaaagggatcaaacca
attaagagtttcgatgacatgggcatgaatgataaagttcttcgcggcgtttatgactac
ggttacaagaaaccatctgagattcagcagagagccttggtgccgattctaaaaggaaga
gatgttatagctcaggctcagtctggtactggtaaaacctccatgattgcaatctccgtc
tgtcaaatcgtcaacacttcttccagaaaggttcaagccttggtgttgtctccatcaaga
gagttggcttcacaaacagagaagactatacaggttattggggcacataccaatattcag
gcgcatgcctgcattggtggtaagagcattggagaagatatcaagaagctggagcgtggt
gtccatgctgtgtctgggacacctggtcgagtttacgatatgataaagagaggaagttta
caaactaaagctgttaaacttttggttctggatgaatcagatgaaatgctgagtaaaggt
ttgaaagaccagatttatgacgtttacagagctcttccacacgatattcaggtttgcttg
atttctgctactcttcctcaagagattttggagatgacagaaaagtttatgacagatcct
gtgaggattcttgtgaagcctgatgaattgactcttgaaggaattaaacaatactatgtt
gatgttgataaagaagagtggaaatttgatactctttgcgatctttatggaaggcttatt
attaatcaagctattatcttctgcaacacaagacaaaaggtggattggcttactgaaaag
atgaggagtagcaatttcatagtctcatcaatgcatggagacaaacgtcagaaggagaga
gatgaaatcatgaaccagtttcggtcatttaaaagccgtgttttaatcgcctcagatgta
tgggcacgagggatcgacgttcaaactgtttctcatgtcattaattatgatatacccaac
aacccggagctatacattcatcgtataggacgagcgggtcgttttggtcgtgaaggtgtt
gctattaactttgtaaaatcttcagacatgaaggatcttaaggatattgagcgacattac
ggtaccaaaatccgcgagatgccagctgatcttgtctag
DBGET
integrated database retrieval system
