Arabidopsis lyrata (lyrate rockcress): 9327899
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Entry
9327899 CDS
T01578
Name
(RefSeq) chaperonin 60 subunit beta 1, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9327899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9327899
03110 Chaperones and folding catalysts [BR:
aly03110
]
9327899
03029 Mitochondrial biogenesis [BR:
aly03029
]
9327899
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9327899
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
9327899
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
9327899
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP60 / Chaperonin
9327899
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
9327899
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9327899
Exosomal proteins of other body fluids (saliva and urine)
9327899
Exosomal proteins of breast cancer cells
9327899
Exosomal proteins of colorectal cancer cells
9327899
Exosomal proteins of bladder cancer cells
9327899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
9327899
NCBI-ProteinID:
XP_020870055
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MASTFTATSSIGSMVAPNGHKSDKKLMNKLSSSSFGRRQSVCPRPRRSGSAIVCAAKELH
FNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP
VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK
ALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENN
LYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYP
ILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVG
LSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLN
ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKV
DAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATG
KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYGY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaactttcactgccacgtcttccattggttcaatggttgctccaaatggtcac
aaatctgataagaagcttatgaacaagttgtcttcaagctcttttggaaggagacaaagt
gtgtgtcctagacccagaagatctggttctgcaattgtatgtgcagccaaggaattacat
ttcaacaaagatgggactaccataaggaaacttcaagctggtgtcaacaagctcgcagac
cttgttggtgttacactaggacccaaaggacgaaatgttgtccttgagagcaagtatgga
tcgccaagaattgttaatgacggtgtgactgttgcaagagaggttgagttggaagacccg
gttgagaacattggtgctaagcttgtgaggcaagcggctgccaaaaccaatgacttggct
ggtgacggtacaacaacatctgttgttcttgcacaaggttttattgctgagggtgtcaag
gtggtagctgctggtgcaaaccctgttttgatcaccagaggtattgagaagacagcaaag
gctttggttaccgagctcaagaaaatgtccaaggaggtggaagacagtgaacttgcagat
gttgcagctgttagtgcgggtaacaacgacgaaattggaaatatgattgctgaagcaatg
agcaaagtgggcaggaaaggtgtggtgacccttgaggagggtaaaagtgccgaaaacaac
ctctacgtcgtagaaggaatgcaatttgatcgtggttatatctccccttactttgtgaca
gacagcgagaaaatgtctgtcgagttcgacaattgcaagttacttctcgttgataagaaa
attaccaatgcaagagatcttgttggtgttttggaggatgcaattagaggcggataccca
atattaataattgcagaagacattgaacaagaagctttagctactcttgttgtaaacaag
cttagaggtacactgaagattgcagctctcagggctccaggatttggagagcgtaagagc
caataccttgacgatattgccattctaactggagcaactgtgatccgagaggaagttggt
ctttcacttgacaaagctggaaaagaggttcttggtaacgcttcaaaggtcgtcctcacg
aaggagacttcgaccatagtgggtgatggaagcacacaggatgcagtgaaaaagcgtgtt
acacagattaaaaatcttattgagcaagcagagcaagattatgagaaggaaaaactgaat
gagagaattgcaaagctctctggtggagttgctgtgattcaggttggagcacaaactgag
acagaactcaaagagaagaagttgagagttgaagatgctcttaatgctacaaaggccgct
gttgaggaaggtattgttgttggtggtggttgcactctgcttcgtcttgcttccaaggtt
gatgccattaaagccactcttgacaatgatgaagaaaaggttggagcggatatcgttaaa
agagcactgagttatccccttaaactgatcgccaagaatgctggtgttaatggaagcgta
gttagcgagaaggtactttccaacgataacgtgaaattcggttacaatgctgcaaccggc
aagtacgaggatttgatggctgcaggaatcatcgatccaacaaaggttgtgagatgttgc
ttggaacacgcagcttcggttgcaaagactttcttgatgtcggactgtgttgttgttgag
atcaaggaacctgaaccagttcccgtcggcaacccaatggacaactcaggatatggatac
taa
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