Arabidopsis lyrata (lyrate rockcress): 9327914
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Entry
9327914 CDS
T01578
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
aly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9327914
09124 Replication and repair
03420 Nucleotide excision repair
9327914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9327914
03400 DNA repair and recombination proteins [BR:
aly03400
]
9327914
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
9327914
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
9327914
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
AdoHcyase
Motif
Other DBs
NCBI-GeneID:
9327914
NCBI-ProteinID:
XP_002894525
UniProt:
D7KN16
LinkDB
All DBs
Position
Unknown
AA seq
592 aa
AA seq
DB search
MAGGQVEKRVKYKSSVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKNTKE
ESNKPPWLNLTNKLGKSHIFEFENYPDMHACRDFITKALAKCEEEPNKSVVSTSSEQLSI
KELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMM
VSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEY
LYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTLDMEADQGDDYTHLMD
HGIQRDGTMDVVEPQNDQFRRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQV
SKADGETTKDANLERLERMSRLAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPR
GAKGLKRNVHEAYGLLKESILEIRATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKNP
RESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLE
AMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNGYV
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgggcaagtggagaagcgagtcaaatacaagagctctgtcaaggatcctgga
actcctggatttctcagaattagagaagggatgttgctcttcgtccctaatgatcccaaa
tctgattcaaagctcaaagtgcttacccagaacatcaaaagtcaaaaaaatacaaaagaa
gaatcaaataaacctccttggctcaatctgaccaacaagctgggaaagagtcatatcttt
gagtttgagaattatcctgacatgcatgcttgccgtgatttcatcactaaggcccttgct
aaatgtgaagaggagcctaataaatccgttgtctcgacatcttccgagcaactcagtatt
aaggaattggagctacgcttcaagcttctgagagaaaatagtgagctgcagagattacat
aagcaatttgtggaaagtaaagtactgacggaagatgaattctgggctacaagaaagaaa
ttacttggtaaagattccatcagaaaatcaaaacagcaggtcgggcttaagagcatgatg
gtttctggtatcaaaccatctactgatggacggactaatagagtgacgtttaacttgaca
cctgagataatttttcagatttttgctgagaagccggctgttcggcaggcattcatcaat
tatgttccgagtaagatgacagaaaaagacttctggacaaaatactttagagcagaatat
ctctacagcacaaaaaataccgcagtagctgcagcagaagctgctgaggacgaggaactc
gctgtctttctgaagcctgatgagatattggctcgggaaactcgtcaaaagattagacgg
gttgatccaactcttgacatggaggctgaccagggagacgactacactcatcttatggac
cacggtatccagcgtgatggcaccatggatgttgttgaaccacagaatgatcagtttaga
cgatcacttttgcaagatcttaatcgtcatgctgctgttgtattagaaggcagaagcatt
gatgttgagtcagaagatacgaggattgttgcagaggctctcacacgggttaaacaagta
agcaaagctgatggtgaaaccaccaaggacgctaatctggagagattggagagaatgtcc
cggttggcaggaatggaggatcttcaagcaccacaaaacttcccgttagcaccgctttct
atcaaggatcctcgtgattactttgaatctcaacaaggaaacgtcctcaatgtacccaga
ggagcaaagggattgaagagaaatgtccatgaagcgtatggattattaaaagaatccatt
ttggagattagagctacaggattaagtgatccgttgattaggcctgaagtttcctttgag
gttttcagttcgttaacccgaactatctcaacggccaaaaatattattgggaagaaccca
cgagagagctttctggacagattaccaaagtccactaaggatgaagttctacaccattgg
acatcaatacaagaattactgagacatttttggtcatcttatccgataacaaccacatat
cttcataccaaggttggtaaactgaaggatgcaatgtccaacacttattcaaaactcgag
gcaatgaaagagtcggtgcaatctgatctccggcatcaggtttctctactggttcgtcca
atgcaacaggctcttgacgctgcgttccaacactacgaagcagatctacagagaagaaca
gctaagagcggcggcgaaagaccaaacggctacgtatag
DBGET
integrated database retrieval system
