Arabidopsis lyrata (lyrate rockcress): 9328252
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Entry
9328252 CDS
T01578
Name
(RefSeq) probable serine/threonine protein phosphatase 2A regulatory subunit B''epsilon isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9328252
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aly01009
]
9328252
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9328252
03036 Chromosome and associated proteins [BR:
aly03036
]
9328252
Protein phosphatases and associated proteins [BR:
aly01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
9328252
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
9328252
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
9328252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
DUF4187
Motif
Other DBs
NCBI-GeneID:
9328252
NCBI-ProteinID:
XP_020869655
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MDIDGVDDVHILDPELLQLPGLSPAPLKPSSHIADELFSQWLSLPETARLVKSLIDDAKS
GTPTNVSKNYATTDVSGGSALPAVFLSSSTPPLSPRSSSGSPRFSRQRTSPPSLQSPLRS
FKEPKHELIPQFYYQHGRPPAKDRKEQCISMVDQFFRNYIDGLHVHEFKSITKEVCKLPS
FLSPALFRKIDPNCTDIVTRDAFIKYWIDGNMLSMDTASQIYNILRQQGCKYLRQADFKP
VLDELLATHPGLEFLRTTSEFQERYAETVIYRIFYYINRSGTGCLTLRELKRGNLIAAMQ
QLDEEDDINKIIRYFSYEHFYVIYCKFWELDGDHDCFIDKDNLIKYGNNALTYRIVDRIF
SQVPRKFTSKVEGKMSYEDFVYFILAEEDKSSEPSLEYWFKCVDLDENGVITPNEMQFFF
EEQLHRMECVTQEAVLFSDILCQIIDMIGPEKENCITFQDLKGSKLSGNVFNILFNLNKF
MAFETRDPFLIRQEREDPNLTEWDRFAQREYVRLSMEEDVDEVSNGSADVWDEPLEPPF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggatattgacggagtagacgatgttcatattttagatcctgagctcttgcagctcccg
ggtttatctcctgctccgctcaagccaagctctcatattgccgatgaactcttctctcag
tggctctcactccctgaaactgccagattggtcaagtctttgattgatgatgctaaatct
ggaacaccaactaatgtatccaagaattacgccaccactgatgtttccggtggaagtgct
ttgcctgctgtgtttctgagcagcagcactcccccgctatctccacgaagctcgtctggg
tcccctcgtttctcgaggcaaaggactagccctccttctctccagtctcctctgcgatca
ttcaaggagcccaagcatgaactcattcctcagttctactaccaacacgggcgtccacca
gcaaaagaccgaaaggaacagtgtatatccatggttgatcaattttttagaaactatatt
gatggactacatgtacatgaattcaaatccattacgaaagaagtctgcaagctgccttct
tttctttctcctgcacttttcagaaagatcgatcccaattgcactgatatagttacaagg
gatgcgtttatcaagtattggattgatggaaatatgttatctatggacacagcctcccag
atatataatatactaaggcagcagggctgcaagtacctcagacaggcagacttcaaacca
gttcttgatgagcttctggcaacacatcctgggttagaatttctgaggacgacaagcgaa
tttcaagaaagatatgctgaaactgtcatctacagaatattttactacattaacagatcc
ggaactggttgccttactcttagagagctgaaacgtggaaatctaattgctgctatgcaa
caacttgatgaggaggatgacatcaataaaattattaggtacttctcctatgagcacttc
tacgtcatatactgcaaattttgggaacttgatggtgaccatgattgttttattgataag
gacaatctcatcaaatatggtaataatgcccttacctacaggattgttgatagaatattt
tcacaggttcctaggaagtttacgagtaaagttgaagggaagatgagttatgaagatttt
gtgtacttcattcttgccgaggaagacaagtcttccgagcctagtcttgagtattggttc
aagtgtgtagacttggatgaaaatggcgtaatcactccaaacgaaatgcagttttttttc
gaagagcagctgcatcgcatggaatgcgtaacccaggaagctgttcttttcagcgatatc
ctatgtcaaataattgacatgattggacccgagaaagagaactgcatcaccttccaggat
ctgaaaggatccaaactttcaggaaacgtcttcaatatactcttcaaccttaataaattc
atggcatttgaaacacgtgacccatttctcattcgccaggaaagggaggatccaaatttg
acagagtgggatcgttttgctcagagagagtatgtgagattgtcaatggaggaagatgta
gatgaagtctcaaatgggagtgcagatgtctgggatgaaccactcgaacctccattttag
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integrated database retrieval system
