Arabidopsis lyrata (lyrate rockcress): 9328284
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Entry
9328284 CDS
T01578
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
aly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9328284
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
9328284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9328284
04121 Ubiquitin system [BR:
aly04121
]
9328284
03400 DNA repair and recombination proteins [BR:
aly03400
]
9328284
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9328284
Spliceosome [BR:
aly03041
]
Complex B
Other components
Prp19 complex
9328284
Complex C
Prp19-CDC5 complex
9328284
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
U-box type E3
9328284
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
9328284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
RMC1_N
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_Aladin
PEP5_VPS11_N
zf-Nse
U-box
NBCH_WD40
PROPPIN
WD40_like
eIF2A
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
9328284
NCBI-ProteinID:
XP_002889510
UniProt:
D7KDF6
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MNCAISGEVPEDPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPHTLDDIVPIKTGKIVK
PKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDESRQLLAEAERQLPAAPEVATSNAALSNGKRGIDDGEQGPDAKKMRLGISAEVITEL
TDCNAALSQQRKKRQIPKTLASIDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDVIATG
GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGSSEDGNYT
CRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENVDYTAAA
FHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSISFSENGYFLATAAQDGVRL
WDLRKLKNFRTFEFPDANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPIKTLPDLSGA
GKATCVKFGLDSKYIAVGSMDRNLRIFGLPGDDDTEDSAQDS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgcaatttccggcgaagttccggaggatcctgtggtttctaagaagtcgggt
ttgctctacgagaagcggctaatcgagaggcatatatcggattatgggaaatgcccggtt
actggtgaaccacatactcttgatgacattgttcccatcaaaactgggaagatcgtaaag
ccaaaaccattacacacagctagcatccctggattgcttggaacgttccaaactgaatgg
gacagtttgatgctatcaaattttgcactggaacaacaactgcatactgcgaggcaagag
ctaagtcatgctttgtatcagcatgatgctgcttgtcgtgtgattgctaggcttaaaaaa
gaaagagacgaatcacgacaattgcttgcagaggctgaaaggcagttacctgcagcgccc
gaagttgccacatcgaatgctgctcttagtaacggtaaacgaggtatcgatgatggtgag
caggggcccgatgcaaagaaaatgcgtcttggaatttcggctgaagttatcacagaactg
acggattgtaatgctgctctttctcagcaacgtaaaaagagacagatccctaaaacattg
gcttcaattgatgctctggagaagttcacccaactctcaagccacccacttcacaagacc
aacaaacctggtattttttcaatggacatcctacattctaaggatgtcatcgctacaggg
ggaattgatacaactgccgttctctttgatcgtccttcaggacaaatcttatcaacgctg
actggtcactcaaagaaggttacaagcattaagtttgttggtgacactgatcttgtgtta
actgcttcatcagacaagacagtccgcatctggggaagttccgaggatgggaactatacc
tgtagacatacattgaaagatcactctgcagaggtgcgagctgtaactgtccacgcaacg
aataaatactttgtgtcagcatctcttgacagtacatggtgcttctatgatctgtcttcc
ggtttatgccttgcccaggtgacagatgcttccgaaaatgtggattacacggctgccgct
tttcatcccgacggtctcattcttggaactggtactgctcaatctattgttaagatttgg
gatgtaaaaagtcaggcaaatgtggcaaagtttggcggacacactggagaaatcacctct
atatcattctctgaaaacggttatttccttgcgactgctgcacaggatggtgttaggttg
tgggacttgcgcaagttaaagaacttccgaacttttgaatttccagatgcaaactcggtg
gagttcgaccatagtggatcttatcttggcattgctgcttcagatataagagtattccaa
acagctagtgtaaaagcagaatggaacccaatcaagactcttcccgatctgtccggtgca
ggtaaagcaacatgtgttaagtttggacttgactccaaatacatagcagtcggttcaatg
gaccgtaatctcaggatatttggtttacccggcgatgacgatactgaagattctgcacaa
gattcatga
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integrated database retrieval system
