KEGG   Arabidopsis lyrata (lyrate rockcress): 9328325
Entry
9328325           CDS       T01578                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022  Basal transcription factors
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    9328325
  09124 Replication and repair
   03420 Nucleotide excision repair
    9328325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aly03021]
    9328325
   03400 DNA repair and recombination proteins [BR:aly03400]
    9328325
Transcription machinery [BR:aly03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     9328325
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     9328325
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Zn_ribbon_GTF2H2 Tfb4 IBR
Other DBs
NCBI-GeneID: 9328325
NCBI-ProteinID: XP_020867985
LinkDB
Position
Unknown
AA seq 421 aa
MSNQRKRSNAEREEDDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQY
RRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFD
QNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQV
PSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLY
SVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGY
MCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGK
SCFGCQQSLIGAGNKPGPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLME
E
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagtaatcaaagaaagagatcaaacgcagaaagagaagaagacgacgacgaagatgcg
gaaggtatcggcgagtgggagagagcttatgttgacgacagatcctgggaggagttgcaa
gaggatgagtctggacttttacgcccaattgataacagtgccatttaccatgctcagtat
cgccgccgtctccgtatgctctccgccgctgctgctggtactcgcatccaaaaggggctt
attcgctatctctacatcgtcattgacttctctcgggcagctgcagaaatggatttcaga
ccaagccggatggccataatggccaaacatgttgaagctttcattagagagttctttgac
cagaatcctctgagtcaaattggtttggtctctataaaaaatggagttgcgcatacatta
acagatcttggtggtagtcctgagactcacatcaaagcgttgatgggaaagttggaagcc
ttgggtgactcctctttgcagaacgctctggaacttgtacatgagcatctcaaccaggtt
ccatcttatggtcatcgtgaggttctgatattgtactcagctctatgcacatgtgatcca
ggagatatcatggagaccattcaaaaatgcaagaaatccaaattaagatgctctgtaatt
gggctgtctgcagaaatgtttatatgtaaacacctctgccaggaaaccggcggattgtat
tcagttgcagtggacgaggtgcatctaaaggatcttctgctcgaacatgcgcctccacct
ccggcaatagcagaatttgcaattgcaaatttgatcaagatgggtttcccacagagagct
gctgagggttcaatggcaatctgttcgtgccataaggaagttaagattggagctggttac
atgtgcccgagatgcaaagctcgggtatgtgacctccctacggaatgcactatttgcggt
ctaacacttgtttcatcaccacatttagcgagatcataccatcatctcttcccaattgct
ccatttgatgaggtgcctgctctttcaagtctgaatgataatcggagaaaattgggaaaa
agttgttttggttgccaacagagcctaattggtgcaggaaataaacccggcccatgtgta
acatgtcgtaaatgcaagcactatttctgtctggactgtgacatatacatccacgagagc
ttacacaactgtcctggctgtgagagcattcaccgtcccaaatcagtttccttgatggaa
gaatga

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