Arabidopsis lyrata (lyrate rockcress): 9328415
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Entry
9328415 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9328415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9328415
03012 Translation factors [BR:
aly03012
]
9328415
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9328415
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9328415
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9328415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
R3H
Ank_2
HA2_N
nSTAND3
AAA_19
Ank_5
AAA_22
ATPase
PhoH
AAA_7
Sigma54_activat
AAA_23
Motif
Other DBs
NCBI-GeneID:
9328415
NCBI-ProteinID:
XP_002889613
UniProt:
D7KG55
LinkDB
All DBs
Position
Unknown
AA seq
1580 aa
AA seq
DB search
MAKMKKNTKQARLCETTGAWATKLLEDFRASGNDSYVFEQHLTNSERGIIHQMCRTMGIR
SKSHGTGEERRLSLFKRDDISKSDSKRRFETRNQKGREGDGLSKSYSKHRYETKFQKGGA
IRKSQKLKCVSFPPEAKAVLHDLFTRYPPCDGDTTGTSLGIYTGNVHSNWKDDFFKKPQL
TKNDIQNKVASLSSRLEKEKRFREIIEARSKLPIASFRDAIISAVESNQVVLIAGETGCG
KTTQVPQYLLDHMWHSKQEVCKIICTQPRRISAISVSDRISWERGETIGRTVGYKVRLQS
EGGRGSSVVFCTNGILLRVLIGKGVNSCVPDITHIIVDEIHERDSYSDFMLMILRDLLPS
NPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTYPVRTFFLEDALAVLNSDKNNHLLSA
DSNIPSDKRDFKDEDKVSLDEAIDLAWTNDEFDCLIDLVSSEGSHEAYNYQNSTTGLTPL
MVFAGKGRVSDVCKLLSFGADCTLKSKEGITALVLAEKENQFETAQIIREHGGNIQSNSQ
QAQDLLDKYMATIKPEEVDVGLIVKLMKKICSDSEAGAILVFLPGWEEIRKTKEKLLDDR
FFADSDKFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGR
MKEKSYDPYNDVSTLQSSWVSKANAKQRAGRAGRCQAGICYHLYSKLRAASLSEYRVPEV
MRMPVDELCLQVKMLDPNCNVNDFLHKLMDPPVAQSIANALIILKDIGALTPQEELTELG
QKFGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFTMPLSPGDRKKAAAAKHEL
ASLYGDHSDHLATVAAFQCWKNAKESGQAKEFCSKYFISQIVMKRLDDLRRKLQGELSRH
GVIPSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPVSKNQTRSVVETIAGAKVRVPSLS
KNVDLSSTKYDEALIVFDEITRGDWGVQIRSCSVLPTIPLLLFSREIAVSTTESYDAVKS
DDEEDHEVENVGDAMDIDKEGGRPGEKIMLAPENSVKVVVDRWLPFKVTAFEIAQMYILR
ERLMASILFKVKHPKENLPPHLGASMYAIASILSYDSLAQSSVQTGAVQPIASVVDATSP
RDDIPSANPNELREHDPNTTPMGSKLELANKLGLGNMEESLPSNFADGNEQPDPNTSPVE
DVSVATKQKKMQSESKRCKALNNIDLGYIEENFGNMEENAPSDLANGNEQTLPKSASNLD
MGFMEENTPSDLANGNEKTEPNSANSMELGNMEENKPSDLANGNKQKESKSVSKLDLGRE
KESIPSNFANGNEQRDPNIAPAEDASAAKQPEKKRSRSKKCKSGNNLDLGKMEKSKPSDL
ANGNEQTEPKSANNLDLGNMEENTPSDLANENEQTVLKLPNNSDNDNMEESLPFNLANGD
EQPDPTTAPMEAASVAKQPKKKRSRSKKCKLVNNLDLGNMEEKKPSDMANGNEQKEAKSV
SRLDPSKDKESIPSNLVSGNEQPDSNNTAPVAKKPKRKKRKLANNFDSGNNIEGKMPSTN
GVEQPELNISLTEAALKENN
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatgaagaagaatacgaagcaagctcgtctctgcgaaaccactggggcttgg
gccaccaagctccttgaggattttcgcgcctccgggaacgattcttacgtctttgagcag
catcttacaaatagcgaacgtggcataattcatcagatgtgccgaactatgggtatccga
tcaaaaagtcacgggactggggaagaaaggcgtctttctcttttcaaaagagatgacatt
tcaaagtcagacagcaagcgtaggtttgaaaccagaaatcagaaaggaagagaaggagat
ggcttgtcaaagtcatacagcaagcatcggtatgaaaccaaatttcagaaaggaggcgct
ataagaaagtcacagaagcttaaatgtgtgtcatttccaccagaggcaaaagctgtcctg
catgacttatttactcgctatccaccttgtgatggcgatactacaggaacatcactgggt
atatatactggaaacgtccacagtaattggaaagatgacttcttcaagaaacctcaattg
acaaaaaacgatattcaaaataaagtggcatccctgagttctagactggaaaaagaaaaa
cgttttagagagatcattgaagcacgatcaaagcttcccatcgcatcttttcgcgatgcc
attatatctgcagtggagtccaatcaggttgttcttattgctggtgaaactggttgtggg
aaaactactcaggtgcctcaatatcttctagatcatatgtggcatagtaagcaagaagtg
tgcaaaatcatttgcacccaaccacgtcgtatctcagctatttcagtttctgatcgaata
tcttgggaaagaggtgaaactattgggagaactgtcggctacaaggttcggctgcaaagt
gaaggtggaagagggtcatcagttgttttctgcacgaatggcattctattgagggtgctt
ataggcaaaggcgttaacagctgtgttcctgatataactcacattattgtggacgaaatc
catgaaagggactcctactctgatttcatgttaatgattttaagggacttgcttccgtcg
aatcctcatctccgactgattctaatgagtgctactcttgatgctgagaggttttctgag
tatttcggaggttgcccggttgtccgagtacctggattcacttatccagtgagaaccttt
tttctggaagatgcgctcgctgtcctgaattcagacaagaataatcatctactttctgct
gactcgaacataccaagtgacaagcgtgattttaaagatgaagataaagtttctttagat
gaagcaatcgacttggcatggacaaatgatgagtttgattgtctcatagatctagtttca
tctgaaggaagtcacgaggcttacaattaccagaactcaacgacaggcctaacaccactt
atggtctttgctggaaagggcagggttagcgatgtctgcaagctcctttcatttggcgct
gactgtacactgaagtccaaagaaggtataacagcattagtattagctgaaaaggagaat
caatttgaaactgctcaaataatcagggaacatgggggtaacatccagtccaattctcag
caagcacaagacttacttgataagtatatggcgacaatcaaaccagaagaagtagatgtg
ggtcttatagtgaagttaatgaagaaaatatgcagcgattcagaagctggtgccattctt
gtttttctaccagggtgggaggaaataaggaaaacaaaagagaaattacttgatgatcgc
ttttttgcagatagtgataaattcatcattctatgtcttcactcaagggttccagctgag
gaacagaagaaagtttttaatcgcccccctcgtggttgtcgcaaaattgtgcttgcgaca
aatattgctgaatcagcagttaccatcgatgatgtggtttatgtgatagatagcggtcgg
atgaaggaaaagagttatgatccctataatgatgtgtcaacgctccagtcttcttgggta
tcaaaagcaaatgcaaaacagagggcgggtcgagcaggccgttgccaagctggcatttgt
tatcatctatattctaaactccgggcagcgtctttgtccgaatatagagttcctgaagtt
atgagaatgccagtggatgaactctgcttgcaggttaagatgctggatccgaattgcaac
gtaaatgatttccttcacaaattgatggacccgcctgttgctcaaagtattgcaaatgcc
ttaatcatccttaaagatattggagctttgactcctcaagaagagctgacagaacttgga
cagaaatttggtcagcttccagttcatcctcggattagcaagatgatttatttcgccata
ttagtgaactgtttggatccagcacttattttggcatgtgcagccgacgagaaggatccg
tttactatgcccttgtcgccaggtgatagaaaaaaggctgctgccgcaaaacatgaactt
gcatcgctttatggagaccacagtgatcatcttgccactgttgcagcttttcagtgctgg
aaaaatgcaaaagaaagtggtcaagctaaggagttttgttctaagtacttcatatcccaa
attgtcatgaagaggctggatgatctgcgtcgcaagcttcagggagaacttagtagacat
ggggtcatccctagcagctcaaactgtagcctgaatgctcatgatccgggtattctccgt
gctgttatagcagtaggattgtaccctatgttgggaaggatgtgcccagtttccaagaat
cagacaaggtctgtagtagagactattgctggagccaaagttcgtgtgccctcgctatca
aaaaatgttgacttgtcctctaccaagtatgacgaagctttaattgtttttgatgagatc
actcgaggagattggggtgtgcagataagaagctgcagtgttcttcccactatacctttg
ttactgttttcaagagagatagccgtttctactacagagagctatgatgctgttaagagt
gatgacgaggaagaccacgaagtagaaaatgtaggagacgcaatggacatagataaagaa
ggtggtaggcctggagagaaaataatgcttgcgccggaaaattcagtaaaggtagtagtg
gatcggtggctgcctttcaaggttacagcttttgaaattgctcaaatgtatatcttgaga
gagagactaatggcgtccattttgttcaaggttaaacatccaaaggaaaatttgccgcct
catcttggtgcttctatgtatgcaatagcttctattctctcatatgatagcctcgcacaa
tcttcagttcaaaccggagctgtgcaacctattgcttcagtggtagatgcaacgagtccc
agagatgatataccttccgctaaccccaatgagctacgggagcatgacccgaacactact
ccaatggggtcaaagctcgaattagccaacaagttgggtttgggtaatatggaagagagc
ttgccttcaaatttcgctgatgggaatgagcaacctgacccaaacacttctccagtggaa
gatgtttcggtggctacaaaacaaaagaagatgcagtcagagtccaaaaggtgcaaggcg
ctcaacaacattgatttggggtatattgaagagaattttgggaacatggaagagaatgct
ccttctgatctggctaatgggaatgagcaaacattgccgaagtcagctagcaacttggac
atggggtttatggaagagaacacgccttctgatctggcgaatgggaatgagaaaacagag
cctaactcagccaacagcatggagttggggaacatggaagagaacaagccttctgatttg
gcaaatgggaataagcaaaaagagtctaagtcagtcagcaagttggatctgggtagggag
aaagagagcattccttctaatttcgctaatggaaatgagcaacgtgacccaaacattgct
ccagctgaagatgcttcagcggctaagcaaccagaaaagaagcgatcaaggtccaaaaag
tgcaaatcaggcaacaacctggatttggggaagatggaaaagagcaagccctccgatctg
gcaaacgggaatgagcaaacagagcccaagtcagccaacaacttggatttagggaatatg
gaagagaacacgccttcggatctggctaatgagaatgagcaaacagtgcttaagctacct
aacaactcggataatgataacatggaagagagcttgcctttcaatcttgctaatggtgat
gaacaacctgacccaaccactgctccaatggaagctgcttcagtggctaagcaaccaaaa
aagaagcgatcaaggtcgaaaaagtgcaaattagtcaacaacctggatttggggaacatg
gaagagaagaagccttctgatatggctaatgggaatgagcagaaagaggctaagtcagtc
agcaggttggatccgagtaaggataaagagagcatcccttcgaatcttgtcagtgggaat
gagcaacctgactcaaacaacactgctccagtggctaagaaaccaaaaaggaaaaagcgc
aaattagctaacaacttcgattcgggtaacaatattgaagggaaaatgccttctactaat
ggggttgagcagcctgaactaaacatttctctgacagaagctgcattaaaggagaacaat
tag
DBGET
integrated database retrieval system
