Arabidopsis lyrata (lyrate rockcress): 9328422
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Entry
9328422 CDS
T01578
Name
(RefSeq) prolycopene isomerase, chloroplastic isoform X1
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00906
Carotenoid biosynthesis
aly01100
Metabolic pathways
aly01110
Biosynthesis of secondary metabolites
Module
aly_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
9328422
Enzymes [BR:
aly01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
9328422
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Paralog
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
HI0933_like
Thi4
Pyr_redox_2
GIDA
GMC_oxred_N
Motif
Other DBs
NCBI-GeneID:
9328422
NCBI-ProteinID:
XP_002892360
UniProt:
D7KG68
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All DBs
Position
Unknown
AA seq
590 aa
AA seq
DB search
MNLCFQNPVKCGSCLFSALITSNYKLGTWNLGFNGRILENRKNIKPPVVTVKSVSSSVVG
TVEGTRRDETSVYDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSSGYYERDGYT
FDVGSSVMFGFSDKGNLNLITQALKAVGRKMEVIPDPTTVYFHLPNNLSVRIHREYDDFI
AELTSKFPHEKEGILAFYGVCWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLAYYL
PQNAGAIARKYIKDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHYGGINYPVGGV
GGIAKSLAEGLVDQGSEILYKANVKSIILDDGKAVGVRLADGREFFAKTIISNATRWDTF
GKLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPY
GSIFLSIPTILDPSLAPNGRHILHIFTTSSIEDWEGLPPKEYEAKKEDVAARIIQRLEKK
LFPGLSSSITFKEVGTPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGD
SCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSRVLDVGLLGLLGWLRTLA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgtgttttcaaaatcccgtaaagtgtggtagttgtttgttctccgcgttgatt
acctcgaattacaagctgggtacttggaatttagggtttaatggtcgaattttagagaat
cggaagaacattaagccccctgtggttacagtgaaatccgtttcttcaagtgtggttggt
accgtagaggggaccaggagagatgaaacaagtgtgtacgacgccattgttatcggttct
gggattggtggattggttgctgcgactcagctagctgttaaagaagctagggttttggtt
cttgagaagtatttgattcctggtgggagctctggttattacgaaagagatggttatact
tttgatgttggctcctctgtcatgtttggtttcagtgataaggggaacctaaacttgata
actcaggcattgaaggcagttggtcgtaagatggaggttatacctgatcctaccactgtc
tatttccatctccccaataatctttctgttcggattcatagagaatacgatgatttcatc
gctgagcttacgagcaagtttcctcacgaaaaggaagggatcctcgcattctatggcgtc
tgctggaagatcttcaactcattgaactctctggaactaaagtctctagaagagcctatc
tacctttttggacagttctttcagaagccgcttgaatgcttgacactcgcttattacttg
ccccaaaatgctggggccatagctcgcaagtacataaaggatcctcaattattgtctttc
attgatgcagagtgtttcatcgtgagcacagtcaatgctttgcagacgccaatgatcaat
gcaagtatggttttatgtgacaggcactatggaggaattaactacccagttggtggagtt
ggtggaattgccaagtctttggcagaaggacttgttgatcaaggcagtgaaatactctac
aaggctaatgtaaaaagtataatacttgatgatggaaaggcagttggtgtaaggctagca
gatggaagagaatttttcgctaaaacgataatttcaaatgctacaagatgggatacgttt
gggaagctgttaaaaggagaaaagcttcctaaagaagaagaaaatttccagaaagtctac
gtcaaggctccatcctttctttcgattcacatgggtgttaaagcagaggttctccctcca
gatacagattgccatcattttgtgctcgaggacgattggaagaatctggaggagccttat
ggcagtatattcctcagcattccaaccattcttgatccatctttggctccaaatggtcga
catatacttcacatatttacaacttcgtccatcgaggattgggagggactccctccaaaa
gagtatgaggcgaaaaaggaagatgtggcagctagaataatccagagactagagaaaaaa
ctgtttccagggctcagttcatctattacgttcaaggaggtgggaacaccaagaacacac
agacgatttcttgcgagggataagggaacttatgggccaatgcctagaggaaccccaaaa
ggtttattagggatgccgttcaatacaacagctatagatggtctatactgcgtgggggat
agttgctttcctggtcagggagttatagctgtggctttctcaggagtgatgtgtgctcat
cgggtagctgctgatattgggcttgagaagaaatcacgggtacttgatgtaggccttctt
ggtttacttggttggctaaggacactcgcataa
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