KEGG   Arabidopsis lyrata (lyrate rockcress): 9328500
Entry
9328500           CDS       T01578                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
aly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9328500
   03410 Base excision repair
    9328500
   03420 Nucleotide excision repair
    9328500
   03430 Mismatch repair
    9328500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9328500
   03400 DNA repair and recombination proteins [BR:aly03400]
    9328500
Enzymes [BR:aly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     9328500
    6.5.1.6  DNA ligase (ATP or NAD+)
     9328500
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     9328500
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    9328500
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     9328500
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     9328500
   NER (nucleotide excision repair)
    Other NER factors
     9328500
   MMR (mismatch excision repair)
    Other MMR factors
     9328500
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 9328500
NCBI-ProteinID: XP_002892438
UniProt: D7KHZ2
LinkDB
Position
Unknown
AA seq 793 aa
MLAIRSSNYLRCLPSLCTKTQISQFSSVLLSFSRQVSHLRLSSCHRAMSSSRPSAFDALM
SNARAAAKKKTPQTTTSSRSPNKRKIGETQDANLGKTLVSEGTLPKTEDPVEPISDSAKP
RSDTSSIAEDSKTGTKKARTLSKTDKIDEMKSKIGLLKKKPNDFDPEKVSCWEKGERVPF
LFLALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVATVYLAANEIAPAHEGVELGI
GEGTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFR
QIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVY
NEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTGGVWNLPKTCNFTLGVPIG
PMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFLEDGTFEIYSRNAERNTGKYPDV
ALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFD
MLYLNGQQLIQENLNIRREKLYESFEEDPGYFQFATALTSSDIDEIQKFLDASVDVGCEG
LIIKTLNSDATYEPAKRSNNWLKLKKDYMDSIGDSMDLVPIAAFHGRGKRTGVYGAFLLA
CYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEV
WEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEDATSSEQIADMYQAQK
HNHPSNEVKGDDD
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgttagcgattcgatcgtcgaattacctccgatgcttaccttctctctgtactaaaacc
caaatctctcaattctcctccgtgttactgtcttttagccgccaagtttcccacttgcgc
cttagctcgtgccatagagccatgtcttcttcccgcccttctgcatttgacgctctcatg
tccaatgctcgtgcagccgccaagaagaagacgccccagaccactacatcgtctcgctct
ccgaataaaaggaaaattggggaaacccaagatgctaatttgggcaaaacccttgtttcc
gaaggtacacttccaaaaacggaggatccggtggagcctatttctgattctgcaaaaccc
agatcggatacgtcgtcaattgcggaagactcaaagaccggaacgaaaaaggctaggact
ttgagcaagacggataaaattgacgaaatgaagagcaaaattggattgttgaagaaaaag
cctaatgatttcgatcctgaaaaagtgtcttgctgggagaaaggcgagagagttccgttt
ctgtttctcgcattggcttttgatctgatttcaaatgaaagtggccggattgtgattact
gatattctgtgtaacatgttgagaaccgttattgccaccactcctgaggatttggttgct
actgtttatcttgcggcaaatgagattgcccctgctcatgaaggtgtagaattgggaatt
ggtgagggtacaattatcaaggctatctctgaagcttttggtagaactgaggatcatgtt
aagaagcagaatacggaactgggagacttggggcttgttgcaaaaggaagccgttcaact
cagactatgatgttcaagcccgaaccattgactgttgtcaaggtgttcgatacgtttcga
caaattgctaaggaaagtggaaaagatagcaatgaaaagaagaagaatcgaatgaaggca
cttcttgtcgcaacaacagactgtgaaccactttacttaacacgtttacttcaggcaaaa
ttgcggttagggttctcaggtcagactgtcttagctgccttgggacaagctgctgtatat
aatgaagagcactcaaagccacccccaaataccaagtctcctttagaagaggctgcgaag
attgttaaacaagtatttacggtacttcctgtctatgacattattgttcctgctcttcta
accggtggagtgtggaatcttccaaaaacttgtaactttacattgggtgttccaattgga
cccatgcttgcaaaaccaaccaaaggtgtagcagagatactgaataaattccaggacatc
gttttcacatgcgaatacaaatatgatggggaacgtgcacagatacattttttggaagat
ggtacatttgagatatatagtcgaaatgctgaaagaaacactgggaagtacccggatgtt
gctcttgcattatcaagattaaagaagccctctgtgaaatcttttattctggattgtgag
gttgttgctttcgacagggagaaaaagaaaattcttccgttccagattttgagcactcga
gcccgtaaaaatgtgaatgtcaatgatatcaaggttggcgtatgcatctttgcttttgac
atgttatatctaaatggccaacaacttatccaagagaatcttaatattcgccgagagaag
ctatacgaatcatttgaagaagatcctgggtatttccagtttgcaactgctctaacatct
agcgatatcgatgaaatccagaagtttcttgacgcttctgttgatgttggctgtgaaggt
ttaatcattaaaacattgaactcggatgctacctatgagcctgccaagcgatcgaataat
tggctaaaactgaagaaagactatatggacagcattggggactcaatggatcttgtacca
attgctgctttccatggacgtggcaaacgcacaggtgtctatggtgcatttttactcgct
tgctatgatgttgataaggaagagtttcagagcatttgtaaaatcggtactggattttct
gatgccatgcttgacgaacggtcgtccagtcttcgctctcaagtgattgctactccaaaa
caatactaccgagttggagacagcctcaatccagatgtttggtttgagcccactgaggtc
tgggaagtgaaagcagctgacttgacaattagccctgtgcaccgtgcagctaccggcatt
gtggatcctgataagggaatttctcttcgttttcctcgtctacttcgtgtacgggaagac
aaaaagccagaggatgcaacatcatctgagcagattgctgatatgtaccaagctcagaaa
cacaatcatccaagtaatgaagtcaaaggtgacgacgattga

DBGET integrated database retrieval system