KEGG   Arabidopsis lyrata (lyrate rockcress): 9328513
Entry
9328513           CDS       T01578                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9328513
   03410 Base excision repair
    9328513
   03420 Nucleotide excision repair
    9328513
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9328513
   03400 DNA repair and recombination proteins [BR:aly03400]
    9328513
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     9328513
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    9328513
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      9328513
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 9328513
NCBI-ProteinID: XP_020869177
LinkDB
Position
Unknown
AA seq 2160 aa
MSGDNRRRDRKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRD
TGKVYSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLQKKYLKISFDTVQQLMEVKRDLLHIVERNQAKFDALEAYESILAGK
REQRPQDCLDSIVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAE
VRVCAFDIETTKLPLKFPDAEYDQIMMISYMVDGQGFLIINRECVGEDVEDLEYTPKPEF
EGYFKVTNVKNEVELLQRWFYHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELG
FRCDHNQGECRAKFVCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRF
AMEKPQTMASYSVSDAVATYYLYMTYVNPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
QAYKVNVVCPNKNQADPEKFYQNQLLESETYIGGHVECLESGVFRSDIPTSFKLDSSAYQ
QLIDNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTDEVCTACDFNLPGKTCLRKLEWVWRGVTFMGKKSDYYHLKK
QIESEFVDAGANIQSSKSFLDLPKLDQQSKLKERLKKYCQKAYKRVLDKPITEVREAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCC
LPGSFPENFTFKTIDMKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYESHSECSI
EFEVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYSAVAEVADRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTAKRLAEFLGVTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFTTNPEVMKFH
LRKWCKTSSDVGIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHPDWLHKKV
REKDDKFRQRKLVDMFSSANKDGGLETDHPVTKDNVEDIEDFCKENRPSVKGPKPIARSY
EVNKKQSEREQQESWDPEFHDISFQNIDKSVNYQGWLELKKRKWKVTLEKKKKRRLGDLR
SPNQSDAHEINQKVGQGRGGVGSYFRRPEEALTSSHWQIIQLVPSPQSGQFFAWVVVEGL
MLKIPLTIPRVFYINSKVPIAEYFQGKCVNKILPHGRPCYSLTEVKIQEDKFKKESKKRA
ALLADPRVEGIYETKVPLEFSAICQIGCVCKIDNKAKHRNTQNGWEVGELHMKTTTECHY
LERSIPLLFLYNSTSTGRAIYVLFCHASKLMSAVVVDPFNGNELLPSALERQFRDSCQEL
SLESWDGIRFQVRYVDHPEAAKKIIQIAISEYREENCGPTVAVIECPDFNSMKEGIKALD
DFPCVRIPFNGDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRIAQSRYAHVPLGNFGLD
WLTFTIDIFLSRALRDQQQVLWVSDNGVPDLGGINNEEAFFADEVQQTSLVFPGAYRKVS
VELKIHNLAVNALLKSNLVNEMEGGGFLGFEQDVNPRGINSNDNTSFDETTGCAQAFRVL
KQLIHSCLTDVRKSENIYADSILQRLSWWLCSPSSKLHDPALHLMLHKVMQKVFALLLTD
LRRLGAIIIYADFSKVIIDTVKFDLSAAKAYCESLLSTVGNSDIFEWILLEPVHYWHSLL
FMDQYNYAGIRATDDEISLDEVTIEPKWSVARHLPEYIERDFIIIVAKFIFDPWKFAIEK
KKGSSESLEAQMVEYLREQIGSTFINMLVKKVDDIMSHMKEINVSDASRVSGQAPKGDYT
LEFIQVISAVLALDQNVLQDVLVMRKSLLKYIKVKECAAEAEFLDPGPSFILPNVACSNC
DAYRDLDICRDPALLTEKEWSCGDPQCGKIYDREQMESSLLEMVRQRERMYHMQDLVCIR
CNQVKAAHLTEQCECSGSFRCKESGSEFSKRMEIFLDIAKRQKFRLLEEYISWILYGPSY
NT seq 6483 nt   +upstreamnt  +downstreamnt
atgagcggagacaatcgaagacgggatcgaaaggatacgcggtggtcgaagaagcctaag
gtagtgaacactgcggaagatgaactcgaatctaaactcggatttgggcttttctctgaa
ggtgaaacccgacttggctggttactcacattctcatcctcatcttgggaagatcgcgat
actgggaaagtctatagttgtgtggacctttactttgttactcaggacgggttttctttc
aagacaaagtacaagttccgcccttacttctatgcagccacgaaagacaaaatggaattg
gaagtcgaagcctatttgagacgacgatatgaaagacaagtcgctgatattgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctatccggcctgcaaaaaaaatacctaaaa
atatcatttgatactgtgcaacaattgatggaagtcaagagggatctgttgcatatcgtc
gaacgaaaccaggcaaaatttgatgcacttgaagcatacgaatccatattggctggaaaa
cgagaacaacgtcctcaagattgcttagactctatcgtggacctccgcgagtacgatgtt
ccttatcatgttcgatttgcaattgataatgatgtgcggagtgggcaatggtacaatgtc
agcatttccagcaccgatgtcatactggagaagaggacagatcttcttcaacgcgcagaa
gtccgtgtttgtgccttcgatatagagacaacaaagcttcctttgaagtttccggatgct
gaatatgatcaaattatgatgatatcctacatggtcgatgggcaaggttttctaattatt
aacagagagtgtgttggcgaagatgtagaagatctggaatatacacccaaaccagaattt
gaagggtatttcaaagttactaatgttaaaaatgaggttgaactcctccaaagatggttt
taccatatgcaagagttgaaacccggtatttatgttacatacaatggtgacttttttgac
tggccatttatagaacggagagcatctcatcatgggataaaaatgaatgaggaattggga
ttccggtgtgatcataatcaaggtgaatgtcgagctaaattcgtttgtcatttggattgt
tttgcttgggttaaacgtgatagctatcttcctcagggaagccatggtctgaaggctgta
acaaaggcaaaactgggttatgatccactggaagtgaacccagaggatatggttcggttt
gcgatggaaaagccacagacaatggcctcctactctgtctctgatgctgttgcaacttac
tacctatacatgacatatgtcaatccgttcattttttctctcgcaactatcatcccaatg
gtccctgatgaggttttacgcaaagggagtggcaccctttgtgaaatgcttctgatggtt
caggcttacaaggtaaatgttgtatgtcccaacaaaaatcaagctgaccctgagaaattc
taccaaaatcaacttcttgaaagtgagacatatattggtgggcatgtagagtgccttgaa
agtggtgttttcagatctgacattccaaccagttttaaactcgattcatcggcataccag
caactgattgataaccttggtcgggatctggaatatgctatcactgtggaagggaaaatg
agaatggattcaatttccaattatgatgaagtgaaggacgaaatcaaggagaagctcgag
aaattacgagatgaccctatacgtgaagaggggcctcttatttatcaccttgatgtcgca
gcgatgtatccaaatatcattttaacaaacaggctccagccaccatcaatagttacggat
gaggtttgcacagcatgtgatttcaacctccccggaaagacctgtcttagaaaacttgaa
tgggtttggcgtggggtgacattcatgggaaagaaaagtgattattaccatttgaagaag
cagattgagtctgaatttgttgatgctggtgcaaatatacagtcttcaaaatcattcctt
gatctgccaaagctggatcaacaatctaagctaaaagaacgactaaaaaaatattgtcaa
aaggcttataaacgagtacttgacaagccaattactgaagttcgtgaggctgggatatgc
atgagagaaaaccctttctatgtggacactgttcggagctttcgagataggaggtatgaa
tacaaaacacttaacaaggtctggaagggaaaattgtcagaggccaaggcaagtggtaat
tcaatcaagatccaggaagcacaggacatggtagtggtttacgattccttgcagctagct
cataagtgtatacttaattccttctatggatatgtcatgcgaaagggtgcaagatggtat
tccatggaaatggctggtgtagttacctatactggagccaaaatcatacagaatgcccgt
ttgcttattgagcgaattgggaaaccacttgagttggatacagatggtatatggtgttgt
ctccctggatcttttcctgagaactttacttttaaaacaatagacatgaagaaactcacg
atctcgtatccttgtgttatgcttaatgttgatgtggcaaagaataatacaaatgatcaa
tatcagactcttgtagatcctgtacgcaagacttatgaatcacatagtgaatgctcaatt
gaatttgaagtagatggaccgtacaaggcaatgattattcctgcatcgaaagaagaagga
atcttaattaagaagcgctatgctgtttttaatcatgatggaaccttagcagaactcaag
gggtttgagatcaagcgtagaggggagttgaaactcattaaagttttccaggccgagctt
tttgacaaatttctccatggatcaacccttgaagagtgctattctgctgttgcagaggtt
gctgatcgatggcttgacctactcgataatcaaggaaaagatattgccgatagtgaactg
ctagattatatatcagaatcaagcacaatgagcaaatcgttagcagattatggtgagcaa
aagtcatgtgcagtgaccacagcaaaacgcctggctgaatttcttggtgttacaatggtc
aaagataaaggactgcgttgccagtacattgttgcttgtgaaccaaagggtacacctgta
agtgaacgtgctgttcctgttgccatatttacaacgaatccagaagttatgaagtttcat
cttcgaaaatggtgcaagacatcatcagatgtcggaattcgtctaattattgactggtcg
tattacaagcagcgccttagttcagctatccaaaaagttattaccattcctgctgcaatg
cagaaggtggcaaatcccgtgcctagggtgcttcatcctgactggctccataaaaaggtt
cgtgagaaagacgacaaatttcgccagagaaaactagttgatatgttcagctcagcaaat
aaagatggtgggttggaaacagatcatccggtgactaaagacaatgtggaagatattgag
gatttttgcaaagaaaacaggccttcagtgaaagggccaaaaccaattgcgcgttcttat
gaagtcaataaaaaacagtctgaacgtgagcagcaagagagctgggatccagagttccat
gatatctcatttcagaacattgacaagagcgtaaactaccaaggatggcttgaactgaaa
aagagaaaatggaaagtaactctagaaaagaagaaaaaacgaaggttgggtgatctaaga
tctccaaaccagagtgatgcccacgagataaatcaaaaagttggtcagggaagaggtggt
gtgggttcatactttaggaggcctgaagaagctttgactagttcacattggcagataata
cagctggttccaagtccacagagtggacaattttttgcttgggtggttgtggaagggttg
atgcttaagatcccattgacgatcccaagggtgttttacattaattccaaagttcctata
gccgaatatttccaaggaaagtgtgtcaacaagattcttccccatggaaggccttgttat
agtttgactgaggtcaagattcaagaagataaatttaaaaaggaaagtaaaaagcgtgca
gctcttcttgcagaccccagagttgagggcatatatgaaactaaggtgcctctggagttt
agtgctatatgtcagattggatgtgtatgcaaaattgataacaaagccaagcaccgtaac
acccaaaatggatgggaagttggtgaacttcacatgaaaactactactgagtgtcattac
ttggagcgttcaattccacttcttttcttgtataacagtacctcaacagggcgtgctata
tatgttttattttgtcatgcatcgaagcttatgtctgccgtggtagttgatccttttaac
ggcaatgaattattaccatctgccctagagagacagtttagagatagttgccaagaattg
tcacttgagtcttgggatggtatccgtttccaggtgcgctatgttgaccatcccgaagct
gccaagaagatcatacaaatagcaataagtgaatacagagaggaaaattgtggaccaact
gttgctgtcatcgaatgccctgactttaactccatgaaggaaggtatcaaggccctggat
gatttcccatgtgtgaggattcctttcaacggcgatgacaatagttatcagcctgtctcc
tggcaacgtccagcagcaaaaatagcaatgttccgttgtgctgcagcatttcagtggttg
gatcggaggattgcccaatcaagatacgcccatgtgcctctggggaattttggacttgat
tggctaacattcacaatagatatcttcctatccagggcactccgtgaccagcaacaggtc
ctctgggtgtcagataatggtgttccagaccttggaggtataaacaacgaagaggcattc
tttgctgatgaggtgcaacagacaagtttagtattccctggagcgtatagaaaagtgtct
gtggagttaaagatccataacttggctgttaatgcccttctgaaaagcaacctggttaat
gaaatggaaggaggcggttttttgggatttgaacaggatgtgaatcctagaggaattaat
tcaaacgataacaccagttttgatgagaccactggatgtgctcaagcttttcgtgtcctg
aaacagttgattcatagttgcttgactgatgtgcgtaaatctgaaaatatatatgctgat
tccattttgcaacgtctgtcttggtggctctgcagcccttcctcgaagctccatgatcca
gctcttcatctcatgcttcacaaggtcatgcaaaaagtgtttgcactgctattgactgat
ttgcggagattaggtgctataataatatatgcagacttctcaaaggtcattatcgacaca
gtgaaatttgatctatctgcagctaaggcttattgtgaaagcttgctatcaacggtgggg
aatagcgatatctttgagtggatattgctcgagccggttcactactggcactcattactt
ttcatggaccagtataactacgctggtatccgagctaccgatgatgaaatttcacttgac
gaagtgactattgaaccaaagtggagtgttgcacgacatttacccgagtatattgagagg
gatttcattataatcgttgccaagtttatatttgacccctggaaatttgcaatagagaaa
aaaaagggcagttcagagagtttagaggcacagatggtagaatatctaagagaacagatt
ggatcaaccttcataaatatgcttgttaaaaaggttgatgatatcatgtcacacatgaag
gagataaacgtttcagatgcatctcgagtttctggtcaagctcccaaaggagattacacg
ttggaatttatacaggttatctctgctgttctggctcttgaccaaaacgtcctgcaagat
gttctggtaatgagaaagagtctgttgaagtacattaaagtaaaagagtgtgctgctgaa
gccgaatttcttgatcctgggccatccttcatcttacctaatgtagcttgcagcaactgt
gatgcctacagagacctagatatatgcagagacccagcactattaacagagaaagaatgg
tcatgtggggatccacaatgtgggaagatatatgacagagagcagatggagagtagcctt
ctcgagatggtgagacagagagaaagaatgtaccatatgcaggatctagtgtgcattagg
tgcaatcaggtgaaagcagctcatttgacagagcagtgtgagtgttctggttcctttaga
tgcaaggagagcgggtcagagttcagcaagaggatggagatcttcttggatatagcaaag
cgccagaagtttagactgttagaagaatacatctcatggatcttatatggccccagctat
taa

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