Arabidopsis lyrata (lyrate rockcress): 9328546
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Entry
9328546 CDS
T01578
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9328546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9328546
Spliceosome [BR:
aly03041
]
Common components
Common spliceosomal components
SR proteins
9328546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
9328546
NCBI-ProteinID:
XP_020866926
LinkDB
All DBs
Position
Unknown
AA seq
267 aa
AA seq
DB search
MSSRWNRTIYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD
AIYGRDGYDFDGCRLRVEIAHGGRRGSSSVDRYSSSYTGSRAPSRRSAYRVLVTGLPPSA
SWQDLKDHMRKAGDVCFSEVFRDRGRMSGVVDYSNYDDMKYAIRKLDDTEFRNAFSRAYI
RVREYESRSVSRSPNDSRSYRSRSRSRGRSCSYSSRSRSVSPARSVSPRSRSLSRSRSPY
SSVSRSRSRSRSRSNSPVSPVSLKGEI
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgatggaatcgtacgatctacgttgggaatttgcctggagatattcgcatg
cgtgaggttgaagatctcttctacaagtatggaccaattgtggacattgatttgaagatt
ccaccgagacctcctggttatgcctttgtcgagtttgaagatcctcgtgatgcagacgat
gcaatttatggacgtgatggttatgattttgatgggtgtcgtctacgggttgagattgca
catggtggccgtagaggttcatcatcagttgataggtacagcagcagctatactgggagc
cgtgcaccttctaggcgctctgcctatcgcgtgcttgtgaccggattacctccttctgct
tcgtggcaggaccttaaggatcacatgcgaaaagctggagatgtctgcttctctgaagtt
ttccgtgaccgtggtcgcatgtctggggttgtggattatagcaactatgatgatatgaag
tacgcgataaggaaacttgatgacactgagtttcgaaatgctttctctagagcctatata
cgggtgagagaatatgagtcgaggagtgtgagtcgcagcccaaatgattctagaagttat
agaagcaggagtcggagccgtggtcgaagctgtagctatagtagcaggagcaggagtgtg
tcacctgctagatctgtttccccacgttcacggtcccttagtcgttctcgttcgccatac
agctctgtctcaaggtccagatcaagatcaagatcaagatcaaattctcctgtttcacct
gtaagtctaaaaggtgagatctga
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