Arabidopsis lyrata (lyrate rockcress): 9328753
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Entry
9328753 CDS
T01578
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
9328753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9328753
Membrane trafficking [BR:
aly04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
9328753
Hops complex
9328753
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf_RING_Vps8
zf-RING_11
Nup54_57_C
zf-RING_UBOX
TXNDC16_2nd
zf-C3HC4
zf-RING_Vps41
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
9328753
NCBI-ProteinID:
XP_020867854
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MDQGRQAFSVDLLERNATKNRGMITCMAAGNDVIVLGTSKGWIIRHDFGLAGSSEIDLAV
GRTGEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHTKWPKPRVLSRLKGLVVNAVAWNR
QQITEVSTKEIIVGTQDGQLFEMAVDEKDKREKYIKFLFELDELPEAFKALQMETANISS
GMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFYIKQRRAVH
FAWLSGTGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSDGTEAVKPGSMALSEYHF
LLLIGNKVKVVNRISEQIIEELQFDITSDSVVRGIIGLCSDASAGVFYAYDQNSIFQVSV
IDEGRDMWKVYLDLKVYAAALANCRDPLQRDQVYLVQAEAAFTNKEYLRAASFYAKVNYV
ISFEEVTLKFISINEPEALRTFLLHKLDNLSKEDKCQITMISTWATELYLDKINRLLLED
DTAIENRDSEYHSVIQEFRAFMSDCKDVLDEATTMKLLESYGRVEELVYFANLKEQYEIV
VHHYIQQGEAKKALEVLQKSSVSVELQYKFAPELIMLDAYETVEAWMANKNLNPRRLITA
MMRYSSEPHAKNETHEVIKYLEFCVHRLHTEDPGIHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRTRACVHIYSMMSMHEEAVALALQIDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVKQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEECGVCK
RKILMMAGDFRMAQGYSSAGPLAPFYVFPCGHSFHAQCLITHVTSCAHEEQAEHILDLQK
QLTLLGSETRRDINGNRSDEPITSTTTADKLRSELDDAIASECPFCGELMINEITLPFIK
PEDSQHSTSWDLRPAQTNLANQRTISLPV
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaaggcaagcgttttcagttgatcttcttgagagaaatgccacaaagaat
cgtggcatgattacatgtatggctgctgggaatgatgtaattgttcttggaacaagtaaa
ggatggattatccgccatgatttcggacttgcgggttcttctgaaattgatctcgctgtt
ggtcggactggggagcaatcgattcacaaggtttttgttgatcctggtggtagtcattgc
attgctacagtcactggtgttggaggagctgaaactttttatactcatacaaagtggcct
aagccgcgtgtgttgagccgtttgaaaggtttggtggttaacgctgtggcttggaataga
caacagataacagaagtttctactaaggagatcattgtgggcactcaggatgggcagctg
tttgagatggccgtggatgagaaggacaagagagagaagtacatcaagtttttgtttgaa
ctagatgaacttcccgaagccttcaaggctttgcagatggaaacggccaacataagcagt
gggatgaggtactatgtgatggctgtaacacctactcgactctactcgtttacagggatt
ggaacattagaatctgtttttgctagttataaagaacgtgcagtccattttatggaactt
cctggtgaaataccaaacagtgagctacatttctatataaagcaacgaagagcggtgcat
tttgcatggctttcagggacaggaatttatcatggtggcctaaattttggagctcagcac
agttatccaaatggtgatgagaactttgtggagaacaaagcactcttggactactcaaaa
ctgagtgatggcactgaagcagtcaagcctggttcgatggcactctctgaatatcatttc
ttgcttcttattgggaataaggttaaggttgtgaatcgcataagtgaacaaatcattgaa
gagctccagtttgatataacgtcagattcagttgtgaggggcataattggactttgcagt
gatgcctctgctggcgttttctatgcatatgatcaaaattcgatattccaggtttctgtg
attgacgaaggccgagatatgtggaaggtttacctggacttgaaagtctatgctgcagct
ttagcaaactgtcgtgaccctctccagagagaccaagtttatttagttcaggcagaagct
gcattcaccaataaggaatatctgcgagcagcatcattctacgcgaaagtcaattatgta
atatcttttgaggaggtcactttgaagtttattagtataaacgaaccagaagctttaaga
acattcttgttgcataagcttgataatctttcaaaggaggataaatgccaaattacgatg
atatcaacatgggcaactgagctgtatctggacaagataaatcggctgcttttggaagat
gacactgctatagaaaatcgcgactcggagtatcactcagtcattcaagaattccgtgct
ttcatgagcgattgcaaggatgtattggatgaggcaaccacaatgaaacttctggaaagt
tatggtcgggttgaggaattggtatattttgcaaacttgaaggagcagtatgaaattgta
gttcaccattatattcagcaaggtgaagcaaagaaagcattggaagtgctccaaaaatct
tcagtttcagttgaacttcagtataaatttgctccagaacttattatgcttgacgcatat
gaaaccgtggaagcatggatggccaacaaaaatcttaatccaaggagattaattactgca
atgatgcgttactctagcgaacctcatgcaaagaacgagacacatgaagtcatcaaatat
cttgagttttgcgtccaccgtctgcataccgaggatccagggattcacaatctgcttctc
tcattatatgccaagcaggaagatgacagtgccctcctccgttttctgcaatgcaaattt
gggaaaggacgggagaacggtcccgaatttttctacgatcccaaatatgcgttgcgccta
tgtctcaaggaaaagagaacccgtgcctgtgtccatatatacagcatgatgtctatgcat
gaagaggcagtagcccttgctcttcagattgatccagaacttgctatggctgaggctgat
aaggttgaagatgatgaagacttaagaaagaagctgtggctgatggttgcaaagcatgtt
gtcaagcaggaaaagggagctaaaagggaaaacataaggaaagctattgcctttctcaag
gaaactgatggccttctaaagattgaagatattttgcctttctttccggactttgcctta
attgatgacttcaaggaagcgatttgctcatctctcgaggattacaacaagcaaatagaa
caattgaaagaggagatgaatgatgccacacgtggtgcagataacattagaaatgatatt
agtgcgctaactcaaagatatgctgtaattgaccgcgacgaggaatgcggggtttgtaaa
cgtaaaatcttgatgatggccggggatttcagaatggcccagggatattcttcagcggga
ccattggctcctttttatgtctttccttgtgggcactctttccatgcacagtgcctgatc
acacacgtcacaagctgtgcacatgaagaacaagccgagcacatactcgatctgcagaag
cagctcacattgcttggtagcgaaacccggagggatataaatggtaatcgatctgatgaa
cccataactagcacaactactgcagacaagcttcgatcagagctagatgatgctattgcc
agcgaatgcccattctgtggagaattaatgatcaatgagatcactctgccttttattaaa
cctgaggattcacagcattctacttcatgggacctccgaccagcacagaccaacttagca
aaccagaggaccatttctttgcctgtttga
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