Arabidopsis lyrata (lyrate rockcress): 9328867
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Entry
9328867 CDS
T01578
Name
(RefSeq) probable pectate lyase 3 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9328867
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9328867
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
9328867
NCBI-ProteinID:
XP_002892805
UniProt:
D7KBK0
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MAAVFLNLGGYVFVFFSSFLAIVAPQVRANVAVFDSYWTQRQSDALKQTMGSYDPNPINV
TNHFNYHVNIAVDVSESNNDTRRELTQVRSGRKTKKHSGKCLAYNPIDKCWRCDRNWAKN
RKKLADCVLGFGRRTTGGKDGPIYVVKDASDDDLINPKPGTLRHAVTRNGPLWIIFARSM
IIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQYVNNVIIHNIYVKHIVPGNGGLIRDS
EDHIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTDHQEV
MLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMN
PTIISQGNRFIAPPNEQAKQITKREYTPYTEWKSWNWQSEGDYFLNGAYFVQSGKANAWS
SKPKNPLPNKFAIRPKPGTMVRKLTMDAGALGCKQGKAC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtgtttttgaatcttggcggctacgtttttgttttcttctcgtcgttctta
gctatagtggccccacaggttcgagccaatgttgctgtctttgatagctactggacgcag
cgtcaaagcgatgcattgaaacagaccatgggatcttacgatcctaatccaattaacgtc
accaaccattttaattaccatgtcaatatagcagtggatgtatcggaatcaaacaacgat
acaaggagagagcttactcaggtgagaagtggtcgtaaaacaaaaaaacacagcggaaaa
tgcctggcttataacccgatagacaaatgctggcgatgcgatcgtaactgggcgaaaaac
cggaagaaactagcggattgtgtgctcggattcggccggagaaccactggaggaaaagac
ggaccgatatacgtcgtcaaggacgcgtctgacgatgatcttatcaaccctaaaccagga
acgctaaggcatgcagtgactcgaaacggaccgctttggatcatattcgcaagaagcatg
atcataaaactgcaacaagaactgatgataactagcgacaaaacaatcgatggaagagga
gctagggtttacatcatggaaggtgctggattaacgttgcaatatgtaaataatgtgatc
atacacaatatttatgtcaagcacattgttcctgggaacggtgggttgatcagagactct
gaggatcacatagggcttaggacaaaaagcgatggtgatggaatcagcttgtttggagca
accaatatttggatcgatcatgtctcaatgacaagatgtgcagatggtatgatcgatgct
attgacggctccactgctgtaactatttccaatagtcatttcaccgaccaccaagaggtg
atgttgtttggggcgagggatgaacacgtgatagacaagaaaatgcagataacggttgcg
tttaaccacttcggtaagagattggaacagagaatgcctcgttgcagatatggaacaatc
catgtggtgaacaatgactacacacattgggaaatgtatgcaattggtggaaacatgaac
cctacaattattagtcaaggcaatcgtttcattgctcctcctaacgaacaagccaaacag
attacaaagagagagtacacaccatacactgaatggaaatcttggaattggcaatcagaa
ggagattacttcctcaacggagcttattttgtgcaatccgggaaagcaaatgcgtggagc
tctaaaccgaaaaacccgctcccgaacaagtttgcaattcgacctaaaccgggaacgatg
gtccggaaacttaccatggatgcaggagcacttggctgcaaacagggtaaagcttgctga
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