Arabidopsis lyrata (lyrate rockcress): 9329472
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Entry
9329472 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: chaperonin 60 subunit beta 4, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9329472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9329472
03110 Chaperones and folding catalysts [BR:
aly03110
]
9329472
03029 Mitochondrial biogenesis [BR:
aly03029
]
9329472
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9329472
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
9329472
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
9329472
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP60 / Chaperonin
9329472
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
9329472
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9329472
Exosomal proteins of other body fluids (saliva and urine)
9329472
Exosomal proteins of breast cancer cells
9329472
Exosomal proteins of colorectal cancer cells
9329472
Exosomal proteins of bladder cancer cells
9329472
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
TFB6
KIP1
Motif
Other DBs
NCBI-GeneID:
9329472
NCBI-ProteinID:
XP_020870355
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MASSLSALPFSDRTFRKKPSSSNFFLRARAAAKEVHFNRDGAVTKKLQAGADMVAKLLGV
TLGPKGRNIVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGS
TTSIILAHGLITEGIKVVSAGTNPIQVARGIERTAKALVLELRSMSREIEDHELAHVAAV
SAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRK
REAEFHDCKLLLVDKKITNPKDMFQILDSAVKEAFPVLIVGEDIEQDAPAPVIRNQLKGN
LSSTQKAVEERVSQIKNLIQNTEENFQRKILNERVARLSGGIAIIQVGAQTQVELKDKQL
KVEDALNATKVTPVKTCDSRGXEIVSPRNLISQNLVSN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcactctctgcgttgcctttttctgatcgaactttccgtaaaaagccttct
tcttcgaatttcttccttagagcaagagctgctgcaaaagaagttcactttaaccgtgat
ggcgctgtcaccaagaagcttcaggcaggtgcagatatggtcgctaagctattaggcgtg
acattaggtccaaagggacgaaacatagtgttgcagaacaagtacggacctcccaagatc
gtcaatgacggtgaaactgttcttaaagagattgaattggaggatcctttagagaatgtt
ggcgtgaaacttgtgaggcaagcgggtgctaagactaatgaccttgcgggtgatggttcc
actacatctataattcttgctcatggccttattactgaaggtattaaggtggtttctgct
ggaacaaatcccatccaagtggcccgtggtattgagagaaccgcaaaagctcttgtttta
gagctcaggtcaatgtccagagagattgaagatcatgagcttgctcatgttgcagcagtt
agtgccgggaatgactacgaagttggaaacatgatttccaatgcttttcaacaagtagga
aggactggtgtagtaacaatagagaaaggaaaatacctagtgaacaatcttgagattgtc
gaaggaatgcagtttaatcgtggttatttatcgccttactttgtcactgaccgaaggaag
agggaagctgaattccatgattgcaagctgcttttagttgataagaaaataaccaatcca
aaagacatgttccagatattggattctgctgttaaagaggcctttccagttcttatagtt
ggcgaagatattgagcaagacgctcctgctcctgttattaggaaccaactaaaaggtaat
ctgagctccacccagaaagcagtcgaggaaagggtttctcagatcaaaaatcttatccag
aacaccgaggagaattttcagaggaagatcctcaatgaaagagtagccagattatctggt
ggaattgcaataatccaggtaggtgcacagacacaagttgagttgaaggataaacagcta
aaggttgaagatgccctgaatgcaactaaggtaactccagtcaaaacatgcgattcccgt
ggttgagaaattgtcagtccaagaaacctgatctctcagaatttagtcagcaattga
DBGET
integrated database retrieval system
