Arabidopsis lyrata (lyrate rockcress): 9329565
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Entry
9329565 CDS
T01578
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9329565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9329565
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
9329565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
9329565
NCBI-ProteinID:
XP_002890756
UniProt:
D7KCS2
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MDKERYSRSHRDDRDRDSSPDHSPQREGGRRRDHDGDSKRRDSDHYRSSRRDDREDERDR
TKDRTRGRGGSVDRGEREGSRDREKHHHERSHEGSKEKESRSKRKERDEENGARDGKKKS
RFSDGNAERRSRFEDVAMEVENKNGQVSVSSSGAMNPTNGVTIGASSYGSVASEASMAPS
QTLLTKVSSISTTDENKGSIVRSHEVPGKSSTDGRPLSTAGKSSANLSLDSAALAKAQKA
LQLQKGLAEKLKNLPLLKKVTKPTSEGSPHTRVPSPATTPAASTGTSSASAVPHTGLAGL
GSISNIQAVRRAQELAASMGFHQDPMFAPVINLFPGQAPSDTADAQRPEKPPVLRVDALG
REIDEHGNVISVTKPSNLSTLKVNINKRKKDAFQILKPQLEADLKENPHFDTRMGIDEKK
ILRPKRMSFQFVEEGKWTRDAENLKFKSHFGEAKAKELKVKQAQLAKATDDINPNLIEVS
ERVPRKEKPKEPIPDTEWWDANVLINGEYGDIADGTITESHLKIEKLTHYIEHPRPIEPP
AEAAPPPPQPLKLTKKEQKKLRTQRRLAKEKEKQEMIRQGLLEPPKAKVKMSNLMKVLGS
EATQDPTKLEKEIRTAAAEREQAHTDRNAARKLTPAEKREKKERKLFDDPTTVETIVSVY
KIKKLSHPKTRFKVEMNARENRLTGCSVMTEGMSVVVVEGKSKAIKRYGKLMLKRINWQE
AEKKDENEDEEEEEVNGGNKCWLVWQGSIGKPSFHRFHVHDCVTESTAKKVFMDAGVVHY
WDLAVNYSDD
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggataaggagagatattccaggagccaccgtgacgatcgtgatcgagattcaagcccc
gaccattctccacaacgtgaaggcggtcgccgccgtgaccacgacggtgattccaagcgt
cgtgattcagatcactaccgttcatcgaggcgcgacgatagggaagatgagagagatagg
accaaggatagaactcggggcagagggggatctgtagatcgaggcgagagagaagggagt
agagatagggaaaagcatcaccatgagaggtctcacgaaggaagtaaagagaaagaatcg
aggagcaagaggaaagagagagacgaagagaatggggctagggatgggaagaagaaatct
aggttttctgatgggaatgctgagaggaggagcaggtttgaggatgtggccatggaagtt
gagaacaaaaatggtcaagtctctgtgtcttcttctggggctatgaatccaaccaacggc
gtcacgattggcgcttcttcatatggttctgttgcatcggaagcttctatggcccctagt
caaacactgctcactaaggtatcttcgatatctacaacggatgaaaataagggtagtatt
gtcagatctcatgaggttcctggaaaatctagtacagatggaagaccattgtcaacagct
gggaaaagtagtgcaaacttgtctcttgattcagcagcgttagctaaagctcagaaagca
ctgcagctgcaaaagggattggctgaaaaattgaagaaccttcctttgctgaagaaggtt
actaagccaacttcagaaggtagcccacataccagagtgccatcacccgctaccactcct
gctgcctctacaggcacatcttctgcttcagcagtaccacatactggccttgctggcctt
ggaagtatttccaacattcaagctgttaggcgagcccaggagctggcagctagcatggga
tttcatcaggatcccatgtttgctcccgttatcaacctatttccagggcaggcaccctca
gatacggctgatgcacagagaccggaaaagccccctgttctgcgcgtggatgcactagga
agggaaatagatgaacacggaaatgtgattagtgtgactaaaccaagcaatcttagtaca
ttgaaggttaacataaacaaacggaagaaagatgcttttcagattcttaaacctcaactg
gaagcagatctaaaagaaaacccccattttgacacaaggatgggtattgatgaaaaaaag
attctgagacctaaacgtatgagtttccagtttgtggaggaaggtaaatggacaagagat
gctgagaatttgaagtttaagagtcattttggtgaagcaaaagcgaaagagctgaaggtg
aagcaagcacaactggcaaaggcaacggatgatataaatccaaatttgatagaggtatcc
gaacgtgtcccgagaaaagaaaaacccaaggagccaattccagatactgagtggtgggat
gcaaatgtcctcatcaatggcgaatacggtgacatagctgatggcaccataactgaaagc
catctgaagatagaaaaacttactcattacattgagcatccgcgtcccatagagccacct
gcagaggcagcgcctccaccaccccaacctcttaaactgacaaagaaggaacagaagaaa
cttcgaacccagaggcgtctagcaaaagaaaaggagaaacaggagatgatcaggcaaggg
ctgctggaaccaccaaaggcaaaggtgaagatgagtaacttaatgaaggttcttgggtct
gaagcgacccaagacccaaccaagcttgaaaaagagatccgcacagcagctgcggagcgt
gaacaggcacatacggacaggaatgccgcccggaagctaacccctgcagagaaacgtgag
aagaaagagaggaagcttttcgatgatccaacaacggttgagacaattgtgtcggtgtac
aagatcaaaaagctatcgcatcctaaaacaagattcaaagtggagatgaatgcaagagag
aacagattaacagggtgtagtgtgatgacggagggaatgagtgtggttgtggttgagggc
aagagcaaagcgataaagagatacggaaagctgatgctgaagcgaataaactggcaagag
gcagagaagaaggatgagaacgaagatgaggaagaagaagaagtgaatggcggaaacaaa
tgttggttggtttggcaaggaagtattgggaaaccgagttttcataggtttcatgtacac
gattgtgtgacggaatccactgccaagaaagttttcatggatgctggtgttgttcactac
tgggatcttgctgtcaattactcagacgactaa
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