Arabidopsis lyrata (lyrate rockcress): 9329674
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Entry
9329674 CDS
T01578
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9329674
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9329674
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
9329674
NCBI-ProteinID:
XP_002893613
UniProt:
D7KET3
LinkDB
All DBs
Position
Unknown
AA seq
368 aa
AA seq
DB search
MASLVLTVSLLLATFASSLVETAHSNNVTIPRVSLNVIDACWRRNPNWATNRQALAHCAV
GYGKAAVGGKHGPIYVVTNPSDNPTSPSPGTLRFAVTQPKPLWITFARDMVIVLKSELMV
NSYKTIDGRGAKVEIANGPCLRIKQVSHVIIHGISIHDCKPGSKGWDGDGIRVFQSTHVW
IDHCFFSRCQDGLIDVILSSTAITISNNYFTQHDKVILLGHDDNYMGDKIMRVTIAFNTF
GPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPDKASNKQVTKR
MGAGPDSKRWKWGTAKDVFMNGAFFVPSGGIVRPLYKAGEGFQVAHGSLVPSLTSSAGPL
RCYAGRIC
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggcttccctcgtgttaacagtttcacttctcttggcaactttcgcttcttctcttgta
gagactgctcatagtaataatgtaaccatccccagggtatcactaaatgtaattgatgct
tgctggcgaagaaaccctaattgggccactaaccgtcaagccctagcacattgcgcggta
gggtacgggaaagccgcagtaggggggaaacacgggccgatctacgtggttacaaaccca
tcagacaaccctacaagccctagccccggaaccttaagatttgcggtgacccaaccaaaa
ccactatggatcacattcgcacgtgacatggtgatagtgttgaaaagcgagctcatggtg
aacagctacaagacgatcgatgggagaggggcaaaagttgaaatagccaacgggccatgc
ttaaggatcaaacaagtgagccatgtcattatacatggtattagtatccatgattgtaaa
ccaggttccaaaggatgggatggtgacggaatacgagtttttcaatctacacatgtttgg
atcgatcattgtttcttttctcggtgtcaagatggtttgatcgatgtgattctttcttct
acggctatcactatttctaataactacttcacgcagcatgataaagtgatattactcgga
catgatgacaattacatgggagataaaatcatgagagttaccattgcattcaatactttt
ggaccgggtctgattgagagaatgcctagggtgaggagagggtatgcgcatgtagcaaac
aataggtacgagaaatggcaaatgtatgcgattggaggaagtgctaatccaattatcttt
agtgaaggcaactacttcgttgctcccgacaaagctagcaacaaacaggtgacgaagaga
atgggtgcgggacctgattctaaaagatggaaatggggtacggctaaagacgttttcatg
aacggagctttcttcgtgccgtctggcggaatagtcaggccattgtacaaagcaggagag
gggtttcaggtcgcccatggctctctcgtcccttctcttacttcctctgccggtcctctc
cgttgctacgcaggcaggatttgctaa
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