Arabidopsis lyrata (lyrate rockcress): 9330390
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Entry
9330390 CDS
T01578
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9330390
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
9330390
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aly01009
]
9330390
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9330390
03036 Chromosome and associated proteins [BR:
aly03036
]
9330390
Protein phosphatases and associated proteins [BR:
aly01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
9330390
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
9330390
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
9330390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
DUF7899
ComGF
Motif
Other DBs
NCBI-GeneID:
9330390
NCBI-ProteinID:
XP_020867788
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MNGGDEVVAASADPPLPLEWRFSQVFGERSAGEEVQEAGVSSAVDIISAIEFDNSGNHLA
TGDRGGRVVLFERTDTNNSSGTRRELEEDDYPLRHPEFRYKTEFQSHDPEFDYLKSLEIE
EKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTIGNGTVASSSN
SNITSSCLVNGGVSEVNNSSCTDFSLPPGGISSLRLPVVVTSHESSPMARCRRVYAHAHD
YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPT
HCNMLAYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEG
RYLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRA
ATGSYSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRTLSSITRVVSRGSESPG
VDGNTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtggtgatgaggtcgtcgcagcttcggcagacccacctctgcctttggaatgg
agattctctcaggtcttcggtgaacgaagcgctggtgaagaagttcaagaagctggtgtt
tcctctgcagttgatataatttcagcgatcgaatttgataattctggaaaccatcttgct
actggggatcgtggaggacgtgttgttcttttcgagagaaccgataccaataatagcagt
ggaaccaggagagagcttgaagaagatgattatccactgaggcatccagagtttcgttat
aaaacagagtttcagagtcatgaccctgagtttgattacctcaagagtttggagatagag
gagaaaattaacaaaattagatggtgtcaaacagcaaatggagctctttttctcctatcg
acaaatgataaaaccatcaagttttggaaggttcaagacaagaagatcaagaaaatttgt
gatatgaattcagatccttcaagaactataggaaatggaaccgttgcaagctcgagcaat
tcaaacattacaagctcatgccttgtgaatggaggagtatctgaagtgaacaactcctca
tgtactgacttctctttgccaccaggaggcatctcttcgctgcgattaccagtggtagta
actagccatgagtcaagccctatggctagatgtcgaagagtatatgctcatgctcatgat
tatcatattaattcaatctcaaataacagtgacggcgaaacatttatttctgctgatgat
ttgcgaataaatctttggaatctggaaattagcaatcaaagtttcaatattgttgatgtc
aagcctgcgaaaatggaagatctatctgaggttatcacatcagcagaatttcatcctacc
cattgcaatatgttagcctatagcagttcaaaaggttcaattcgcctgattgatctgcgg
caatcagctttatgtgattcacattcaaaattgtttgaggaaccagagcaagcaggtcct
aaatcgttcttcactgagataattgcttcagtctcagacatcaaatttgcaaaagaagga
agatatctactcagccgtgactacatgacacttaagttatgggacatcaacatggacgca
ggtccagtagcaactttccaggttcatgaatatttgaaaccaaagctctgtgatttatat
gaaaatgattccatctttgacaagttcgagtgttgtataagtggcaatggtttgcgagca
gctacgggttcttacagcaatctgttccgtgtgtttggtgttgccccgggaagtactgag
actgcaaccttagaagcaagcagaaacccaatgaggagacatgtcccaattccgtcgagg
ccatccagaacactaagcagtataacgcgtgttgtaagtagaggatcagagagtcctgga
gtggatggaaatactaatgctcttgattacacaacaaagctgctgcatcttgcttggcat
ccaaatgagaactcaattgcttgcgccgctgcaaatagcttgtacatgtactatgcttaa
DBGET
integrated database retrieval system
