KEGG   Arabidopsis lyrata (lyrate rockcress): 9330492
Entry
9330492           CDS       T01578                                 
Name
(RefSeq) UBP1-associated protein 2C isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9330492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9330492
   03041 Spliceosome [BR:aly03041]
    9330492
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     9330492
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     9330492
Spliceosome [BR:aly03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    9330492
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 9330492
NCBI-ProteinID: XP_002894431
UniProt: D7KKF6
LinkDB
Position
Unknown
AA seq 420 aa
MDMLKKRKLDENGIGMLNDGINGSVSSRLMPQDARKIIERFSTDQLLDILQEAVVRHTDV
LEIVRLTADSDISQRKLFIRGLAAETTTEGLRSLFSNYGDLDEAIVILDKVTAKSKGYGF
VTFKHVDGALLALKEPSKKIDGRVTVTQLAAAGNQGTTNSHVSDISMRKIYVANVPFDMP
ADRLLNQFLAYGDIEEGPLGFDKITGKSRGFALFVYKTAEGAQAALAEPMKVVDGKNLQC
KLAIDGKKGKPPGQDGGAGVGHGHGHGDGMGMVPPPGPYGAAGGGHGGPGGLGNYGGYSG
GPAPHHMNSTPSSMGVGTATGGYGSVYGSHYSGYGAESAGYGGLGAGSMGGTGGGYGGPG
TGSRPYRMPPTSMSGGGYPESGHYGHSSASAYPAQHQPVGSSPVPRVPLGGMYPNVPPNY
NT seq 1263 nt   +upstreamnt  +downstreamnt
atggatatgttgaagaagcgaaagctcgatgagaatggaatcgggatgctaaacgatgga
atcaacggatctgtttcgtctcgattgatgccacaagacgcgagaaagattatcgagcga
ttctctactgatcagcttctcgatatcttgcaagaagctgttgtacggcatacagatgtt
ctagaaatcgttagattgaccgcagattccgatatctctcagaggaagctcttcatccgt
ggactcgcggcggagacgacgacggaaggtcttcgttcgcttttctccaattacggagat
ctcgacgaagctattgtgattctcgataaggtaactgctaaatccaaagggtatggtttt
gtgacttttaagcatgttgatggagctttgcttgctttgaaagagccgtctaagaagatt
gatggccgcgtgacggtcacgcagctcgcggctgctgggaatcaaggtacgacgaactca
catgtttctgatatatcgatgaggaagatttatgtggccaatgtgccgtttgatatgcct
gcggataggttattgaatcagtttttggcttatggggatattgaggaaggtcctttaggt
tttgataaaattactggtaagtcaaggggatttgcgttgtttgtttataagactgcagaa
ggtgctcaggctgcacttgctgaacctatgaaggtggttgatggaaagaatctgcagtgt
aaattggctattgatggtaagaaaggaaagccaccaggtcaagacggtggcgctggggtt
ggacatggtcacggtcatggtgatggaatgggtatggttcctcctcctggaccttatggt
gcagctggtggtggtcatggtggacctggtgggttgggtaattatggtgggtattcagga
ggaccagcaccacatcacatgaattccacaccatcttcaatgggtgttggtactgctact
ggtggctatggaagtgtatatggtagtcattacagtggatatggtgcggaatctgcgggt
tatggtggtcttggtgcaggatcaatgggtggtactggtggtggttatggtgggcctggt
actgggagtcgtccatatagaatgccaccaacttcgatgtctggtggtggttatccagag
agtgggcactatggacattcatcagcttcagcatatcctgcacagcatcagcctgttggt
tcctctccagtgccacgggttcctcttgggggaatgtaccccaatgttccaccaaattac
tga

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