Arabidopsis lyrata (lyrate rockcress): 9330551
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Entry
9330551 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9330551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9330551
03009 Ribosome biogenesis [BR:
aly03009
]
9330551
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9330551
Spliceosome [BR:
aly03041
]
Complex A
U1 snRNP components
U1 related factors
9330551
Complex B
9330551
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Helicases
9330551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9330551
NCBI-ProteinID:
XP_020870242
LinkDB
All DBs
Position
Unknown
AA seq
501 aa
AA seq
DB search
MSRYDSRTGDSTSFRDRRSDSGFGGTSAYGSSGSHSSSKKDNDGNESPRKLDLDGLTPFE
KNFYVESPTVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEIKKAGFT
EPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN
NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY
NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELSNILEEAGQKVSPELASMGRS
TAPPPPGLGGFRDRGSRRGWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgatagccggaccggcgactccacctcgttccgtgaccgtcgaagtgac
tcagggtttggtgggacttcagcatatggaagctcaggtagtcattcatctagcaaaaag
gataatgatggcaatgaatctccaaggaagctagatttggatggtttgactccttttgag
aagaatttctatgtggagtcacccactgtggcggctatgactgacacagaagtggaggaa
tatcgaaagttgagggaaattactgttgaaggcaaagatattccaaaacctgtcaagagt
tttcgtgatgttggctttcctgattatgttttggaagagattaagaaggctggttttact
gaacctacgcctatacaatctcaggggtggccaatggcaatgaagggacgtgatctcatc
ggcattgcggaaactggctctggaaagactatttcctacttactacctgctattgtacat
gttaatgcccaaccaattttagctcctggggatggcccaatcgtcttggttcttgctcca
acacgtgaactggctgtgcagatacagcaagaggcatctaaatttggttcatcgtcaaaa
attaagagcacttgcatttatggtggagttccaaaagggcctcaagtgcgtgatctccag
aaaggtgtggagatcgttatagctactcctgggaggttaatagatatgatggagtcgaac
aacacaaacctacgaagggttacttatcttgttttggatgaggctgatcgaatgcttgat
atggggtttgaccctcagattcggaaaattgtttcacatattcggccagaccgtcaaact
ttgtactggagtgctacttggcctaaggaggtggaacaactatcgaagaagtttctttat
aacccatacaaagtgataataggatcttctgatttgaaagctaaccgtgcaatccgtcaa
attgttgatgtcatttccgaaagccaaaagtataacaagttggtgaagttgcttgaagac
ataatggatggaagcagaattcttgtcttcctcgatacaaaaaaggggtgtgaccaaatt
actcgtcagctccgcatggatggttggcctgctttgtcaatacatggtgataaaagtcaa
gccgaaagagattgggttctctctgagtttagatccggcaaaagccctataatgactgct
acagatgttgcagctcgtggattagacgtaaaagatgtgaagtatgtgataaactatgac
ttccctggatcactggaggattatgttcacaggattggacgaacaggtagagccggggct
aaaggaacagcttacactttcttcacagttgcaaacgcgagattcgccaaggaacttagc
aacatactagaagaagctggacagaaagtgagccccgaattggcttcaatgggtcgcagc
accgctcctcctcctccagggcttggaggattcagagaccgcgggagcagaagagggtgg
agctga
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