Arabidopsis lyrata (lyrate rockcress): 9330595
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Entry
9330595 CDS
T01578
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9330595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9330595
Enzymes [BR:
aly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
9330595
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9330595
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
9330595
NCBI-ProteinID:
XP_002891857
UniProt:
D7KN30
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MRRHKRWPLRPLACSFSSSAAETVTTSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAA
DFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFV
SHPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRRQEEEAS
KRLEMLHGEEGIVSSGETEDLKLVRLADTLFAVRMEKMLNEWRSGLLHGGNASSEFPRIS
NGSTQSMETVFHHMRPALSLKGFTSHQLRVLNSVLGKHFGDLVYIHSNDKDSCSQGFVVY
TDSESDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS
KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE
FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ
HSQLDNFAQNEKLEKYINRLYLSWTRGDIINLRTGHSNADNWRVSKFKYENIVLIWNFPR
KLKAREIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLTLKRQLESSDGPVSV
LHPLSKILEGGNTGAADYEAYKEICSSNISKILFSDQAETVGVKSRTRPDPQGETQRREE
NTVAVTHKASDLIDAFLANREEVETATTN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcacaagcgatggcctttgaggcctctcgcctgcagcttcagctcctcagcg
gcggagacagttactacttcaacggctgcttcggcgacggcggcttttccgttaaagcat
gtgacgaggtcgaacttcgagacgacactgaatgatctgcgttcactcgtaaaggctgcg
gatttcgtggcgattgaccttgagatgactggtgtgacaagcgctccgtggcgtgactcc
ttagagttcgaccgctacgacgtcagatacctcaaagtcaaagactccgccgagaaattc
gccgtcgttcagttcggtgtctgtccctttcgctgggattctcgaactcagtcattcgtt
tctcacccgcacaatttctttgtatttcctcgtcaagagctcacatttgatccaccagct
catgaatttctctgtcagacaacatcaatggattttcttgccaagtatcagtttgatttc
aatacctgcatacatgaaggaatatcttatttgtccagacgacaagaggaagaggcaagt
aagcgtttggaaatgctacatggcgaggagggaattgtttcatccggtgaaactgaagat
ttaaagttggtgcgtttggcagatactcttttcgctgtaaggatggagaaaatgctgaat
gaatggcgctctggcctgttacatggtgggaatgcgtcctctgagtttccgaggatctca
aatggttcgactcagagtatggaaactgtgtttcaccatatgcgtccagctctcagtctg
aagggtttcacttctcatcagctcagagttcttaactcggttttaggaaagcattttgga
gatcttgtttacatacattcaaatgataaagattcctgttcacaaggctttgttgtgtat
actgattcagaatccgacaaggaaaatctcatgaaggaggcaaaggatgaacgcaagaga
ttggcggaaagaaaaatacaatctgcaatcgggttccgtcaagtgattgatctgcttgct
tcagagaaaaagttgattgttggtcacaattgtttcctcgatattgcacatgtatacagc
aaatttgtgggtcctcttccttcaacagctgagaaattcgtcgcctccattaacagtcac
tttccttacattgttgacaccaaaatactcttaaacgtgaatccaatgttgcatcagcgg
atgaaaaagtccagtacatcactatcttctgcgttttcctcgttatgtccgcaaatcgag
ttttcttcaagaagctctgactcgtttcttcagcagcgtgtcaatattgatgttgagata
gacaacgttaggtgttctaactggaatgcaggaggaaagcacgaagctggttatgatgct
ttcatgacaggttgcatctttgcgcaggcatgcaatcatctcggtttcgacttcaaacag
cattcgcaattagataactttgcccagaacgagaaacttgaaaagtacatcaaccgtctt
tatctcagctggacaagaggtgatatcatcaaccttcgaacaggccatagtaatgcagat
aactggcgagtctcaaagttcaaatacgagaacattgtcctcatctggaacttcccacga
aaacttaaggctagagagatcaaagaatgcatatgcaaagcctttggctctgcttctgtc
acctctgtctaccacgtggacgactctgcggtttttgtcttgtttaagaattcagaactc
gtctgggacttcttaacgctcaagcggcagctggagtcaagcgacggtccagtttcggtt
cttcaccctctatccaagatcctcgaaggaggaaacactggagctgcagactacgaagct
tacaaagaaatttgcagctcaaacatctcaaagatcctattctctgaccaagctgaaaca
gttggtgtcaaatcaagaacaagaccggacccacaaggcgagactcagagaagagaggag
aacacagtcgctgtgactcacaaagcatcggatttgattgatgcgtttttagccaataga
gaggaagtcgaaactgctacgactaattaa
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