KEGG   Alteromonas sp. Mac2: AV940_02405
Entry
AV940_02405       CDS       T05899                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
alz  Alteromonas sp. Mac2
Pathway
alz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:alz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AV940_02405 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:alz03021]
    AV940_02405 (rho)
   03019 Messenger RNA biogenesis [BR:alz03019]
    AV940_02405 (rho)
Transcription machinery [BR:alz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AV940_02405 (rho)
Messenger RNA biogenesis [BR:alz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AV940_02405 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB S1CSD-TOTE-2 AAA AAA_22 AAA_19
Other DBs
NCBI-ProteinID: AMJ89421
LinkDB
Position
588323..589588
AA seq 421 aa
MNLTELKNKPISELVAMSEEMGLENMARARKQDIIFSILKSHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHAASRMRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPEAELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTSQEELQKMWILRKIVHEMSEIDAIEFLINKLAMTKTNDEFFNAMKRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaacagaattaaagaacaaaccaattagcgaattagtcgccatgtccgaagaa
atgggcctggaaaatatggctcgcgctagaaaacaagacatcatattctcgatactgaaa
tcgcatgcgaaaggcggcgaagatattttcggtgacggggttctggaaattttacaggac
ggttttggtttcttgcgttcagcagactcttcgtatttagctgggcctgatgatatttac
gtatcaccaagccaaattcgccgatttaacttgcgaacgggcgataccatttctggtaaa
atccgcccgccaaaagacagtgagcgatattttgccctgttaaaaatccgcgaagtaaac
ttcgacaagcctgaaaactcccgtaataaaatcctcttcgaaaaccttactcctctacat
gctgcatctcgtatgcgtatggaacgtggtaatggttcaacagaagatattacggcgcgt
gtattagacctagcctcaccaattggtaaagggcaacgtggtcttatcgttgcaccacct
aaagccggtaaaacccttttacttcagaatatcgcgcaatctattgcagcgaatcaccct
gaagctgaattgatggtattgcttatcgacgaacgtccagaagaagtaacagaaatgcat
cgcctagtacaaggcgaagtggttgcgtcaacgttcgatgaacctgcaagccgtcacgtt
caggtagctgaaatggttatcgaaaaagcgaaacgcttagttgagcacaagaaagatgtc
gttatcttacttgattcaattactcgtttagcacgtgcttataacacggtaattccttca
tcaggaaaagtacttaccggtggtgttgatgctaatgcactgcacaagcctaagcgcttc
tttggtgctgcacgaaacgttgaagaaggcggtagcttaacaattatcgcgacagcactt
atcgatacaggctctaaaatggatgaagttatctatgaagagtttaaaggtaccggtaac
atggaattacacttaaatcgtaagattgctgaaaagcgtgtattcccagccatcgacttc
aaccgttcaggtacccgtcgtgaagagctattaacgtcacaagaagaactacagaaaatg
tggatcttacgtaaaattgtgcacgagatgtcagagattgatgccatagagttccttatt
aataaactcgctatgactaagactaacgatgagttcttcaacgcgatgaagcgtcaaaag
agctaa

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