Alteromonas sp. Mac2: AV940_04955
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Entry
AV940_04955 CDS
T05899
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz03030
DNA replication
alz03430
Mismatch repair
alz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV940_04955 (dnaE)
03430 Mismatch repair
AV940_04955 (dnaE)
03440 Homologous recombination
AV940_04955 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alz03032
]
AV940_04955 (dnaE)
03400 DNA repair and recombination proteins [BR:
alz03400
]
AV940_04955 (dnaE)
Enzymes [BR:
alz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AV940_04955 (dnaE)
DNA replication proteins [BR:
alz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AV940_04955 (dnaE)
DNA repair and recombination proteins [BR:
alz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AV940_04955 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AMJ92601
UniProt:
A0AAC8XWG4
LinkDB
All DBs
Position
1203148..1206567
Genome browser
AA seq
1139 aa
AA seq
DB search
MMDGLNKVKPILGKVSEYNMPAVAITDQMNMCGLVKFYSGAHGLGIKPIIGTDFWVTNEA
FGDEPFRLTLLAMNNEGYKNITVLISKAYLRGHVAHRAVIDQDWLIEHAEGVIILSGAQL
GDVGVALTKNNTSLLAESLAFYKTHFPDRFYLELIRTGRPGEEDYLHRAVECAEREGLPV
VATNEVCFINKEGFDAHEIRVCIHDGYTLDDTRRPKRYSDQQYLRTSEEMVELFSDIPEA
IENTVEIAKRCNVTVRLDEYFLPQFPTGGMTTEDFLVKVSEEGLERRLAFLFPDEQVRAE
KRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRQAVSQIITFGTM
AAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFAAEPRLPEVYDQDEEVKDLID
MARILEGVTRNAGKHAGGVVIAPTTITDFAPLYCDDEGNNPVTQFDKNDVETAGLVKFDF
LGLRTLTIIQWAIDMVKEGKGIDIDITSIPLADAKSFRTLLNAETTAVFQLESRGMKELI
KRLKPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDAEYQHECLQEILEPT
YGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRGAFAEGSKNNNIDPDL
AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMSADMDNTDKIVTL
VDECSRMGLELLPPDLNAGKHKFTVDEKGRIVYGIGAIKGVGEGPIEAIIEARENQGAFK
DLFDFCAKIDIKRVNKRVLEKLVLAGALDNLGPHRAALMASLPDAIAAAGQHAKAESFGQ
SDMFGLLTTEPDEVEQAFADVPLWPEKVWLEGEKDTLGLYLTGHPINQYVEEIRHYTDGR
LVDLKPTGKEQMANAVGLVLGVRVMTNKRGRRWAIVTLDDKSARIDARFFPDTFEQYESM
LETDRILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALALNVETQLLEPKKINQM
QSILQAFKGGSCPVHLLVTHPDAEALITCGARWFVTPEDQLLHDLKQCLGEKAVSILYH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgggcttaataaggttaagcccatacttggcaaagtatccgagtacaacatg
cctgctgtggcgattaccgaccaaatgaatatgtgtggtttggtaaagttttattctggc
gcacatgggcttggcattaaacctattattggtaccgatttctgggtgaccaatgaagcc
ttcggcgatgagccgttccgtcttaccttgcttgcgatgaataacgagggctataagaac
attacggttcttatttctaaggcctacttgcgaggtcacgttgcgcatagagcggttatc
gatcaagactggcttattgaacatgcagaaggcgtaatcatactctctggtgctcaactt
ggggatgttggtgttgcacttactaaaaataacaccagcttgttggcagaatcattggcc
ttctataaaacccatttcccagaccgtttttatcttgagcttattcgtactggtcgccct
ggtgaagaagattacttacatcgcgcggtagaatgtgccgagcgagaaggcttgcctgta
gtggcaaccaatgaagtgtgcttcattaataaagaaggttttgacgcgcatgaaatacga
gtatgtattcatgatggctacacactagatgatactcgtcgacctaagcgttacagcgac
cagcaatatcttcgtaccagcgaagaaatggtggagctgttcagtgatattcctgaggcc
atagaaaacacggttgaaatcgctaagcgatgcaacgttacagtacgattagatgaatac
tttttgccccagtttcctactggcggcatgaccactgaagattttttagtaaaagtgtcg
gaagaagggcttgagcgccgtttagcgttcctgtttcctgatgaacaagtacgggcagaa
aaacgccccgagtacgacgacaggctccgtatcgagttagaagtaatcaaccaaatgggt
ttccctggttacttccttatcgtaatggagttcattcagtggagtaaggacaacaatatt
ccagtaggcccaggtcgtggttctggtgcgggctctctagtggcttacgcattagatatt
accgaccttgatccccttgaattcgacttactattcgaacgattccttaacccagaacgg
gtatcaatgccggatttcgatgttgatttctgtatggatagacgtgatgaggttatcgac
cacgttgccgagctgtatggtcgtcaggcggtatcgcagattattacctttggtaccatg
gcggcaaaagccgtggtgcgcgatgtgggccgagtactaggtcacccttacggttttgtc
gatcgtatttcaaagcttatcccaccagaccctggtatgacgcttgaaaaggcgtttgct
gccgagcctcgtttgcccgaagtgtacgaccaagacgaggaggttaaagatctcatcgat
atggcgcgcattttagaaggcgtaacgcgaaatgcaggtaaacacgctggtggtgtagtt
attgcgccaaccactattaccgattttgcgccgctatactgcgacgatgaaggtaataac
cctgttactcagttcgataaaaacgatgttgaaaccgcagggctagttaagttcgacttc
cttggattacgtacgctaaccattatccagtgggccattgatatggtgaaggaagggaag
ggtatcgacattgatattacctctattcctttggcggatgcaaaaagctttcgtaccctg
ctaaatgcggaaactaccgcggtgttccagttggaatcccgaggtatgaaagagctaata
aaacgtcttaagccagatagttttgaagatattatcgcattggtagccctatttagaccg
ggtcctttgcagtcgggcatggtagataactttatcgaccgtaagcatggccgtgaagct
atttcttatcccgatgctgaataccaacacgaatgtttgcaagaaattttggagcctacc
tacggcattatcttgtatcaagaacaggtaatgcagattgcgcaggaaatggcgggctat
tccctaggtggcgccgatttgttacgtcgtgctatgggtaagaaaaagccagaagaaatg
gctaagcaacgtggcgcgttcgctgaaggctcgaagaacaataacatcgatccagatttg
gcgatgaaaattttcgacttggtagaaaaattcgccggctacggatttaacaaatctcac
tctgctgcttacgccttggtgtcttatcaaactttatggttgaaagcccattatcctgct
gaattcatggccgcagtaatgtcggccgatatggataataccgataaaattgttaccttg
gttgatgaatgcagtcgaatgggtcttgagttattgcccccagacttaaacgcaggtaag
cataagttcaccgtcgatgaaaaaggcagaattgtttacggcattggcgccattaaaggg
gtaggtgaaggccccatagaagccattatcgaagccagagaaaaccaaggtgcgtttaaa
gatttattcgatttttgtgcaaaaattgatattaagcgcgttaataaacgtgtactggaa
aaactagtacttgccggcgcgttagacaatttagggcctcacagggctgcactcatggca
tctttacctgatgctatcgcagccgcagggcagcatgccaaagcggaatcctttgggcag
tcagacatgttcggattgctaacgactgagcctgatgaagtagagcaagcttttgccgat
gtgccactatggccagaaaaagtatggttagaaggtgaaaaagataccttaggtttatac
ctaacagggcaccctattaaccagtacgtcgaagaaattaggcattacactgatggaagg
ctggttgacttaaaacccacaggcaaagaacaaatggccaatgctgttggcttagtgctt
ggggttagggtaatgaccaataagcgaggaagacgttgggctattgtcacattggatgat
aaaagtgcgcgaatagacgctcgttttttcccagataccttcgaacagtatgaatctatg
ctagaaactgacagaatattgctcataaagggacaggtcagctttgatgatttctctggg
ggcaatacaatcaccgcccgtgatgtaatggacattgttcaggcacgggagaaaaacgcg
agagcattggcgttaaatgttgaaacccagttgcttgaaccgaaaaagattaatcaaatg
caatctatcttgcaggcctttaaaggcggaagttgcccggtgcatttattagtaacccat
cccgatgcagaagcactgattacgtgtggtgcacggtggtttgttacaccagaagatcaa
cttttgcacgatctcaaacaatgtttgggagaaaaagccgtttcaatcctctaccattaa
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