Alteromonas sp. Mac2: AV940_11255
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Entry
AV940_11255 CDS
T05899
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV940_11255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alz03019
]
AV940_11255
Messenger RNA biogenesis [BR:
alz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV940_11255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AMJ90995
LinkDB
All DBs
Position
complement(2675087..2676457)
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AA seq
456 aa
AA seq
DB search
MITPKKEELWFLPLGGTGEIGMNLNLYGHDGKWLMVDCGVSFDEPLIPPYRYTGTKKQTH
HRVVAPDPAFIAAQKENIAGIVITHAHEDHVGALPYLWARFQCPIYTTSFTAEVLRRKLA
QTKLANKVPIVEIASEQTLTLGPFDVSWLSVTHSLPEPYALKIATSAGTVLHTADWKIDA
QPITGKPFDSNTYRALGNENILAMVGDSTNATKPGFSISERNCYDGLLSTVKPLQGRVVV
TCFGSNIARLITLARVAQKTGRYVALYGRSLINMYSIARQQGIWPVDLPVADAFHLGYLP
PNEVLGVATGSQGEKNTALSRMANDSHPHLQLDKGDTVIYSAIAIPGNEDSIKRVNNVLS
ARGVKVIMSEESQLPIHASGHPCAEELKLMYHWVKPQIAIPVHGEEVHLKAHAMIAKECG
VKKHYVGQNGDLYRLAPQPSIRRQVINTGRVPVQQD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
ttgataacgccgaaaaaagaggagctttggtttttgccattagggggtactggggaaata
ggcatgaacctgaacctgtatgggcatgacggcaaatggttaatggtagattgtggagtg
tcgttcgatgaaccgcttattcctccttatcgctatactggtacaaaaaagcaaacccat
cacagggtagttgcgccagatcccgctttcattgcggcgcaaaaagagaatattgccggc
attgttatcactcatgcgcatgaagatcatgtaggcgcattaccgtatttatgggcacgt
tttcagtgccccatctataccacttcttttactgccgaagtattacgccgtaaacttgcg
caaaccaaattagccaacaaagtacctatagtagagatagcctctgaacaaacgctgaca
ttagggccctttgatgtaagctggttatcagtaacccattcgctgcccgaaccttatgcg
ttaaaaatagccacgtcagcgggcacggttttacatactgccgactggaaaattgacgcg
cagccaattaccggtaagccttttgacagtaatacctatcgcgccttggggaacgaaaac
attcttgccatggttggagattcaaccaacgcgacaaaaccaggtttctccatctctgaa
cgcaattgctacgacggtttgttgagcacagttaaaccactgcagggcagagtcgtcgtt
acctgttttggtagtaatatcgcgcgattaattaccctagctagggtggcccaaaaaacc
gggcgttacgttgctctatacgggcgctctcttatcaatatgtacagcattgcccgccaa
caaggaatctggcctgtagacttgccagtggcagatgcgtttcatttaggctacttacca
ccaaatgaagtgctcggtgtggcaacaggcagtcagggggagaaaaataccgccctttct
agaatggccaacgacagtcaccctcatttacaattagacaaaggcgataccgttatttat
tccgctattgccataccgggtaacgaagacagcattaagcgagtaaataatgtgcttagt
gctagaggcgtaaaagtaatcatgagtgaagagagtcagctgcctattcatgcaagtggt
cacccatgcgccgaagaactcaaactcatgtaccattgggtgaagccacaaattgctatt
cctgtgcatggcgaagaggtgcaccttaaagctcatgcgatgattgccaaagaatgtggt
gtaaaaaaacactacgtggggcaaaacggtgacttgtatcggttagctcctcaaccaagc
attcgacggcaagttattaatactgggcgagttcctgttcagcaagattaa
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