Alteromonas sp. Mac2: AV940_14425
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Entry
AV940_14425 CDS
T05899
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV940_14425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alz03019
]
AV940_14425
03400 DNA repair and recombination proteins [BR:
alz03400
]
AV940_14425
Enzymes [BR:
alz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV940_14425
Messenger RNA biogenesis [BR:
alz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV940_14425
DNA repair and recombination proteins [BR:
alz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AV940_14425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
TniB
AAA_22
Thioredoxin_8
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMJ91571
UniProt:
A0AAC8XUJ2
LinkDB
All DBs
Position
3401603..3403624
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AA seq
673 aa
AA seq
DB search
MTTDYSSQLQNLFGFPSFRSGQQEVVDGLLNQRSSLAIFPTGSGKSLCYQFVATQLPHLT
LVVSPLLALMKDQLAFLHSKGIAAASIDSTLTAEQNKQVMNDVRSGECKILMVSVERFKN
ERFRQFIESVAVSMLVIDEAHCISEWGHNFRPDYLKLPAYQQELNIPLVLLLTATATKKV
KLDMARRFDIAPENIVQTGFYRPNLNLNVLPVVEANKNQALLDELKRQKGAGIVYVTLQQ
TAEQVARYLQQNGCAASAYHAGLDSDVRQNIQQDFMANKLQVVVATIAFGMGIDKSDIRF
VVHYDLPKSIENYSQEIGRGGRDGQNANCTVLANLDGLVTIENFVYGDTPDKSAIERVIK
DIASQAPEQGSGASSSTANSASDKGMYQWETQINSLSTLSNIRQLPLKTLLVQLELAKVI
RPLYAYFAEFKYRFNTEKADILNLFGKERSDFLNAVFTHTDMKKVWGVVNFDSIFEHYGA
ERSRVVTALEYLHEHNHIELASRLITDVYEVNQQALLADDLSESLAESLARYFAENELKE
VKRIAALVRFFELNSCLNYNLSAYFDDQQAPKECGHCSVCNGKVAKLDYSTPIPLPNKTQ
VAESMAALNAHLKGKFNETITESIYCRFLTAMTMPLFTRLKVRQVPGFGSCEFCRYGDVK
AVVTEILDEGTRL
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagactactcttcacaattacaaaacctgtttggatttccctcgtttcgctcc
ggccagcaagaggttgtagatggtctgttaaatcagcgctcatcgcttgccatatttcct
accggttctgggaagtcgttgtgttatcagtttgtggcaacccaactgccccacttaacc
ttggtggtatccccgttattagccttaatgaaagatcagctcgcttttctacatagcaaa
ggcattgctgccgcgagcatcgattcaacactaactgctgagcaaaataagcaagtcatg
aacgatgttcgctctggtgagtgtaaaattttaatggtgtcggtagaacgttttaagaac
gaacgtttcaggcagtttatagagtctgttgcggtttcaatgttggttatcgacgaagcg
cattgtatctctgagtgggggcacaactttcgccctgattatttgaaactgccagcctat
caacaagaattaaatatccctttagtgctgctgctaaccgcaacggccactaaaaaagtg
aaactcgatatggcacgccggtttgatattgcgcccgagaatattgtccaaaccggtttc
taccgcccaaaccttaatttgaatgtgctgccggtggtagaagcaaataaaaaccaagcg
ctattagatgaacttaagcgccagaaaggcgcaggcattgtatatgtaacactgcaacaa
accgctgaacaagtggcccgctatttacaacaaaacggctgtgcagcaagtgcatatcac
gcggggctagacagtgatgtgcgccagaacattcaacaagatttcatggcgaacaagcta
caagtggtagtggccaccattgcgtttggcatgggcattgataaatctgacattcgtttt
gttgtgcattacgatttacctaagtctatagagaactacagccaagaaattggccgtggt
gggcgcgacggacaaaacgcgaattgtactgtattggctaatcttgatggtctggtgact
attgaaaattttgtttatggcgatacgccagacaaatccgctattgagcgggtaattaag
gacattgccagtcaagcgccagagcaaggctctggcgcttcaagcagtactgcaaacagt
gcatcggacaaaggtatgtatcaatgggaaacacaaattaatagcttatcgacgttaagt
aatattcgtcagctaccccttaaaacgctgttagtacagttggaactagccaaagttatc
cgtccgttatacgcctattttgctgaattcaaataccgctttaataccgaaaaagccgat
attctcaacttatttggtaaagaacgaagcgatttcctaaacgccgttttcacccatacc
gatatgaaaaaagtatggggcgtagtgaatttcgacagtatttttgagcattacggtgcc
gagcgttcaagagtggtgacggcgttagaatatttacacgaacataatcatatcgaactc
gcctcgcgtttaatcaccgatgtgtacgaggtgaatcaacaagcactgttagcagatgat
ctatcagaaagcttggccgaaagcctagcccggtattttgctgaaaatgagcttaaagaa
gtaaaacgtattgctgctctggtacggttcttcgagcttaatagctgtttaaactataac
ttatcggcctattttgatgaccaacaggcgccaaaagaatgcggccattgcagtgtgtgc
aatggtaaagtggccaaactagactactcaacacctattcccttaccaaataaaacccaa
gtagccgagtcgatggcagcgcttaatgctcaccttaaaggtaagtttaacgaaaccatt
actgaatctatctattgccgttttttaaccgcgatgactatgcctttatttactcgttta
aaagtaaggcaagttccagggtttggaagttgtgagttttgcaggtatggggatgtgaaa
gccgtagttactgaaattttagatgagggcacaaggctttaa
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