Alteromonas sp. Mac2: AV940_15615
Help
Entry
AV940_15615 CDS
T05899
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz00040
Pentose and glucuronate interconversions
alz01100
Metabolic pathways
alz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AV940_15615
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AV940_15615
Enzymes [BR:
alz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AV940_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
RicinB_lectin_2
Ricin_B_lectin
F5_F8_type_C
Motif
Other DBs
NCBI-ProteinID:
AMJ92778
LinkDB
All DBs
Position
complement(3691372..3693345)
Genome browser
AA seq
657 aa
AA seq
DB search
MSGAYGSGFHTQNGGATGGAGGDVVRVTTGKQIHEALCNRNTSETPIIIEVEGTINHGNT
EKVSGSSCNTAEDKIELKDISNVTLIGVGQGALFDELGIHIRNSTNIIIRNVHVRNVKKS
GSPTSNGGDAIGIETDVRNVWVDHVTLEASGGESEGYDGLFDVKDNSKYITLSYSHLLNS
GRGGLVGSSESQVNNGPLTYHHNIFENLNSRVPLVRGATAHIYNNHYDGIESSGINSRAG
AEVKVENNYFEDAKDVLGTFYTTTDGDWQVAGNIFGSGVTWSSSDDDYQPAGPNVVSTTS
VGIPYSYTLDNASCVRNILQQTAGANKNLQVSDGSCGTTGGGDNGGGDNGGGDNGGGDNG
GGDNGGGDNGDTPSGVNLSLSADADGSSKASGTSYGNVKDGDTSTYWSPNGSTGRVSIKG
LDTTINAVRIVERSGAEGRVTSWRLVNNDTGSIITSGNTIPDPITFSDVSLGKLNFVIDS
SSSTPQIAEFEIYFGLDSNGGGSSDGGSNVVNGTVNGIYRITPVHSGRSFDVANCGTTNG
SNIRQWEWLDNDCQKFTISQVDGIWHRISPLNALQQSLEISNNSTSAGENVQLWQYSGGN
NQLFRFQSAGSGKWRIVARNSELCLDIAGQGGGNGANIIQWTCIAQADNQMFELTRQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgcttatggctcgggctttcatacccaaaacgggggtgcgaccggtggcgca
ggaggtgatgtggtacgcgtaacaacgggcaaacagatacatgaggcactctgtaatcgg
aacaccagtgaaacaccgattatcatcgaagtagaaggcactataaatcacggtaatact
gaaaaagtgtcgggaagtagttgcaataccgcagaggataaaattgaattaaaagacatt
agtaacgtaacccttataggggtaggtcaaggtgccttgtttgatgaacttggaatacac
atacggaattctaccaacattattatacgaaatgttcacgttcgaaatgtgaaaaaatcg
ggttcaccaacatctaacggtggcgatgccatcggtattgaaaccgatgtgcgaaacgtg
tgggtagatcacgtaacattagaagcaagtggcggcgaaagcgagggttacgacgggtta
tttgatgtaaaggacaattcaaaatatatcacgctttcgtacagtcatttgctcaactct
ggtcgtgggggattagtaggttcaagcgaatcccaagtcaataatgggccattaacctat
caccataatatttttgagaatttaaactcgcgagtacctctagtgcgaggggccactgcg
catatttacaacaatcattacgacggtattgaatcgtcgggtatcaattcaagagcaggg
gctgaggttaaagttgagaataactattttgaagatgctaaagatgtgttgggaacgttt
tataccacgactgatggcgattggcaggtagccgggaacatttttggaagcggcgtaaca
tggagttcatctgacgatgactatcagccagccggtccgaacgtggtttctaccactagt
gttggcatcccgtattcttatactctcgataatgcctcatgcgtccgcaacatcttgcaa
caaacagctggcgcgaataaaaatttgcaagtatctgacggtagttgtggaactactggc
ggtggtgacaacggcggtggtgacaacggcggtggtgacaacggcggcggtgataacggc
ggcggtgataacggcggcggtgataacggcgatacgccttccggcgttaacctctctctc
tcggccgatgctgatggtagttcaaaagcaagtggtaccagttatggcaacgttaaagat
ggggataccagcacctattggtcacctaacggttcaaccggtcgcgttagtatcaaaggg
ttggacacaaccattaacgcagttcgaattgtagaaagaagtggtgctgaagggcgcgtt
acgtcttggagattggttaataacgacactggttcaatcattacatcaggtaacactatt
cctgatcccataacgttttcagatgtaagcttaggcaaacttaactttgtcattgattca
tcatcatcgacgcctcaaatagctgaattcgaaatttattttgggctagatagtaatgga
gggggcagtagtgatggaggttcaaatgttgtcaatggcacggtgaacggaatctataga
attacccctgtacatagcggacgaagttttgatgtagccaactgcggaactacaaatggt
tcaaatattcgccaatgggaatggttagacaatgattgtcaaaaatttaccatttcgcaa
gtggatggaatttggcaccgtatctcaccattaaacgcattgcagcagagtttagagata
tcaaataactcgacatctgcaggggagaacgttcaattgtggcaatatagtggaggcaat
aatcaactgttccgctttcaatctgccggttcgggtaagtggcgaattgtagcaagaaac
agcgagctatgccttgatatagctgggcagggcgggggtaatggtgccaatataattcag
tggacttgtattgctcaagcagacaatcaaatgtttgaattgactagacagtaa
DBGET
integrated database retrieval system
