Alteromonas sp. Mac2: AV940_17820
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Entry
AV940_17820 CDS
T05899
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AV940_17820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alz03021
]
AV940_17820
03400 DNA repair and recombination proteins [BR:
alz03400
]
AV940_17820
Enzymes [BR:
alz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AV940_17820
Transcription machinery [BR:
alz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AV940_17820
DNA repair and recombination proteins [BR:
alz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AV940_17820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AMJ92179
UniProt:
A0AAC9AGX5
LinkDB
All DBs
Position
complement(4253462..4257628)
Genome browser
AA seq
1388 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEDYLDALEEHGDEFDAKM
GAEAVFDLLKVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEAMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGVKTEKVTLTDTTVGRAIFSLMLPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQTSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFGGVTMTPLIEGGDVVEPLRERVL
GRVVAEDVVKPGTTEVLVERNVLLDEALVDMLETNSVDQIQVRSVITCDNDFGVCANCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNEKSVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIVTERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKSNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGTIGFGKETKGKKRLVITPPEGDAYEEMIPKWRQLNVFEGEKVERGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCVITHSGDTQFL
EGEQVEVSNVKVTNREVEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEEIEEMSVSAADAEQALTEAL
NAGDDSAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagactgaagaattcgataatatt
cgaatcggtcttgcttcacctgacatgattcgttcatggtcttttggtgaagttaagaag
ccagaaacaattaactaccgtacgttcaaaccagaacgtgacggcctgttttgtgcgcgt
attttcggaccagttaaagactacgaatgtctttgtggtaagtataagcgtctgaagcac
cgtggtgttatctgtgaaaaatgtggtgttgaagtaaccctaactaaagtacgtcgtgag
cgtatgggtcacattgaactggcaagcccagttgcacacatttggttccttaaatcactt
ccgtctcgtatcggcttaatgcttgatatgacacttcgtgatattgaacgtgtactatat
tttgaatcttacgtagtaaccgagccgggtatgactacccttgagcgcagccaacttctt
aacgaagaagattacttggatgcacttgaagagcatggtgacgagtttgacgctaaaatg
ggtgctgaagccgtatttgaccttttaaaagtgttagatgtagatgctgatgtagctgct
atgcgtgaagagttgccttcaatcaactctgaaactaagcgtaagaaaatcaccaagcgt
cttaagttgcttgaatcattccaacagtctggcaacaagccagagtggatgatcttgact
gtacttccagtacttccgccggatcttcgtccgttggtaccactggacggtggtcgattt
gcaacgtctgacctgaacgatttataccgtcgtgttatcaaccgtaacaaccgtcttaag
cgtcttctagaccttgcggcgcctgacattatcgtacgtaacgaaaaacgtatgcttcag
gaagcggtagatgcactactagataacggtcgtcgtggccgcgctatcacaggttctaac
aaacgtcctcttaaatcacttgccgatatgattaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactactctggtcgttctgtaattaccgttggtcctaca
ttacgtcttcaccaatgtggtcttcctaagaaaatggcacttgagttattcaagccgttt
atctatggaaaacttgaaggtcgtggtttagcaacaactatcaaagcagcgaagaagctg
gttgaacgtgaagcaccagaggtatgggacgtactagacgacgttatccgtgaacaccct
gttatgcttaaccgtgcaccaacacttcaccgtttgggtatccaggcatttgaaccaacc
cttatcgaaggtaaagcgattcagcttcacccactagtatgtgcggcctacaacgccgat
ttcgatggtgaccaaatggctgtacacgtgccgctgactattgaagctcagcttgaagca
cgtgcgttgatgatgtcaaccaacaacattctgtcacctgcaaatggtgaacctatcatc
gttccttcacaggacgttgtattgggtctttattacctaacccgtgacaaagtaaatggt
ttgggtgaggcaatggtatttaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgcagaacttcactctcgcgttaaagtacgtatcactgaatacgacattgacgaagat
ggcgtgaagactgagaaagtaacgctaacagatactactgttggtcgtgcaattttctca
ttgatgcttcctaaaggtttgccgtttgaaattatcaaccaggcaatgggcaaaaagcag
atttcacgtttgctaaacgcttgttaccgtacactgggtcttaaagacacagtaatcgct
gctgaccaaatcatgtataccggtttccactacgcaatgattgcgggtgcatctgttggt
attgatgacatggtaatcccagctgcgaagaaagatattatcgacgctgcagaagcggaa
gttatcgagatccaggaacagttccaaaacggtcttgtaacagccggtgagcgctacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgatatcgtaattaaccgcgatggcgaagaagaagagcaaacctcatttaac
tctgtttatatgatggccgactctggtgctcgtggtagtgccgctcagattcgtcagcta
gctggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtcttaacgtacttcagtacttcatctctactcacggtgcgcgt
aaaggtcttgccgatacagcacttaagactgcgaactcgggttacctaactcgtcgtcta
gtagatgttgcacaagatttggttattaccaacgacgactgtggcaccttcggtggtgtt
acgatgacaccgctaattgaaggtggtgacgttgtagaaccacttcgcgagcgtgtacta
ggtcgtgtagttgcagaagatgtagttaaaccaggcacgacagaagtattggttgagcgt
aatgtgttactagacgaagcgctagtagacatgcttgaaactaactctgttgaccaaatt
caagtacgctcagttatcacttgtgataacgacttcggtgtgtgtgcaaactgttatggt
cgtgaccttgctcgcggacatatggttggaagcggtgagtctgtgggtgttattgccgca
cagtcgatcggtgaaccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcttctgctgagaacagcgttcaggttaaaactgcgggtagccttaagcta
cacaatgaaaaatcagtacgtaactcagacggcaaagtggttattgtttctcgttcaaca
gaacttactgttatcgatgaacaaggtcgtgagaaagagcgttataaagtaccttacggt
gctgtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcgttactgaacgtgcagctaagattagcttcgccgacatc
gacgactctaacactgagatgcaacaagacgaactaactggtcttacgcgtatcgtagtt
aaagatcttgcgaagagtaactctaaagaacctaaacttatcctagaaagtgatgagttc
ggtcttcaagagattcgcttaccaagctttactactatcgaagcgaaagaaggtaaggtt
gctaacgaaggtgacgtgttagcacgtatacctcaagaaagctcgaagacacgtgatatc
acgggtggtctacctcgcgtagccgacttgtttgaagcacgtaagcctaaagagcctgct
atccttgctgaagtttcaggtactattggtttcggtaaagaaaccaaaggtaagaaacgt
ttggttatcacgccgccagagggtgatgcatacgaagagatgattccaaaatggcgtcaa
cttaacgtgtttgaaggtgagaaagtagaacgtggtgaagttattgcagatggccctgag
tcaccgcatgacatcttgcgtctacgtggtatctctgctgtagcaaactacatcgtgaac
gaagttcaggaagtttaccgtctacagggtgtaaaaattaacgataagcacatcgaagtt
gttattcgtcagatgttgcgtaagtgcgttattacacattcaggtgatactcagttcctt
gaaggcgaacaagttgaagtgtctaacgtgaaagtgaccaaccgtgaagttgaaaaacac
ggtaagattccagcgcagtatgaaactcaactgcttggtatcactaaagcgtcgctatct
actgagtcattcatctcagctgcatcgttccaagaaacaacacgtgttcttaccgaagct
gctgttcaaggtaaagaagatgaccttcgcggtctgaaagaaaacgtaatcgtgggtcga
ttgattccagcgggtacaggtttcgcttaccatgaacgtcgtgcacaacgtcgtaaagaa
gaaatcgaagaaatgtcagtttctgctgctgatgcagaacaggcactaaccgaagcgctt
aacgccggtgacgactcagccgaataa
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