Anaplasma marginale St. Maries: AM263
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Entry
AM263 CDS
T00216
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ama
Anaplasma marginale St. Maries
Pathway
ama03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ama00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AM263 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ama03021
]
AM263 (rpoC)
03400 DNA repair and recombination proteins [BR:
ama03400
]
AM263 (rpoC)
Enzymes [BR:
ama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AM263 (rpoC)
Transcription machinery [BR:
ama03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AM263 (rpoC)
DNA repair and recombination proteins [BR:
ama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AM263 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AAV86366
UniProt:
Q5PBG3
LinkDB
All DBs
Position
219929..224176
Genome browser
AA seq
1415 aa
AA seq
DB search
MKMLDLYGYTSIAQSFDKICISIASPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKI
FGPVNDDECLCGKYRKKRYRGIVCEKCGVEVTSSKVRRERMGHIELVSPVAHVWFLKSLP
SRIGALLDMPMKSIESILYSGDFVVIDPMTTPFSKGEVISESVYNQARDAYGDEGFIALT
GAEAIRELLVRLDLGAIRAGLRSELESTSSEMKRKKVVKRLRIIENFIASGNRPEWMILT
VIPVLPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLEKLLKLNPPAIMIRNEKRMLQ
EAVDGLFDSSRRSYVSSRAGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
GLKLHQCGLPKKMALELFKPFICSKLKMYGVAPTVKLANKMIQSEKPEVWDVLDEVIREH
PILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLTLQRAQAPDQEVMSFGELSHVEYALH
EGIVHTSSKIKYRMQRCNSDGTIVSEVVETTPGRLILWQIFPQHKDLTFDLVNQVLTVKE
ITSIVDLVYRSCGQRETVEFSDKLMCLGFQYASQSGISFGCKDMIIPDTKAAHVENASEK
IKEFSIQYQDGLITRSERYNKVVDEWSKCTDLIARDMMKAISLSDEEGKLNSIYMMANSG
ARGSASQMKQLAGMRGLMAKPSGEIIETPIISNFREGLSVFEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCTVVEYDCKTKDGVVARAVIEGGAVVATLDSVVLGRVAAVDTY
NPVTEELLLSAGELIDEGKVEKIRVAGLDAVRVRSPLTCESKKGICSLCYGRDLAVGDLV
SIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVEVSNLIAVLDAEVKLVNSNVVTDK
YGNQIVMSRSCEVVLLDSVGNEKMRHSVPYGAKLYVSDGQPVKMMDKMAEWDPYTIPIIT
EKTGTIKYVDLIYGVSINEVLDESTGISNRVVIDWKLHLQGANLRPRLVLLDEDGNIATL
YNDLEASYFVPIGAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPK
EHAIVSDVDGYVEFGKDYYRSKRRIFIRPVDKSLPAVEYLVPKGKHTIVNEGDFVHKGDL
LMDGDPDQHDILRVLGAEALASYMISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDP
GDTMYLVGEHAGREEVMRLNRKLEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETT
KVLTEAAFSGKEDPLYGLKENVIVGRLIPAGTGFIMNKVKKLAMLDQSDYATYYNSELRE
IMGDLGDELIAEGEAASPGRSGDGYLGNGGGVVDY
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgttggatttgtacggctataccagcatagcgcagtcgtttgataagatttgc
atatccattgctagccccgagagcattagggcgatgtcctacggtgagatcaaggatatc
tctaccactaactatcgcacattcaaggttgaaaaaggcggccttttttgcccgaaaatc
tttggtcccgtaaatgacgatgaatgtctatgtggaaagtataggaagaagcggtatagg
ggcatagtatgcgagaagtgtggggttgaggtcacttcttccaaggtgagacgggagagg
atggggcacatagagctggtttcccctgtggcacacgtgtggtttttgaaatccttgcct
tcacgtatcggggcattgcttgatatgcccatgaagtccattgaaagcatcctctacagt
ggggacttcgtggttatcgatcctatgaccactccattctccaagggggaggttataagt
gaaagcgtatacaaccaagcccgcgacgcctacggagatgaaggttttatcgccttaacc
ggggctgaggccatacgggagttattggtaaggctggatcttggggccatcagagctggg
cttaggagcgagctggagtctacctcatctgaaatgaaaagaaaaaaggtggtcaaaaga
ttgcggatcatcgaaaacttcatcgcttctggcaatagaccagagtggatgatactaact
gtaatccctgtgctgccaccggacctgaggcctttggtgtctttggaaaatggtaggcct
gcagtttccgatctgaaccaccactataggacgattataaaccgtaataacaggctggag
aagctgctcaagctcaacccacccgcgattatgatccgcaatgagaagaggatgctgcaa
gaggccgtggatgggctttttgatagcagtaggcgcagctacgtttcaagcagggctggt
agcatgggctacaaaaagtctcttagtgacatgcttaagggaaagcaggggcggtttagg
cagaatttgctgggtaaaagggtagactattcgggtaggtctgtaatcgtcgttgggcct
gggttgaagttgcaccagtgtggcctgcccaagaagatggccctggagctcttcaagccg
tttatttgttccaagcttaagatgtacggagtggcgccgacggtgaagcttgcaaacaag
atgatccagagcgaaaagcccgaggtttgggatgttttggacgaagtaataagggagcat
cccatattgctaaacagggctcctaccctgcacaggcttggtctccaggcgtttgacccc
gtacttatagaaggtaaggccatacagctgcatccgcttgtgtgtagtgcgtttaatgcg
gacttcgatggggaccaaatggcggtacacgtccctctgtcacttgaagcacagcttgaa
gccagggtgttgatgatgtccacaaacaacattcttagcccttcaaatggtaggccgata
atcgtcccgtccaaggatattgtcctgggaatatattacctcacgctgcaaagagcacaa
gcgcccgaccaggaggttatgtcttttggggaattgagccatgtggagtacgccctgcat
gaggggatagtacacacgtcttccaagataaaatacaggatgcagcgctgcaatagcgac
ggcacaatagtgagcgaggttgttgagacgaccccgggcaggctgattctctggcaaatt
tttccccagcacaaggatctcacgttcgatctcgtgaaccaggtgcttactgtgaaggag
attacatctatagttgacttggtgtataggagttgcgggcaaagggagacggtggagttt
tccgacaagctcatgtgtctgggttttcaatatgcgtcacagtctggtatctcttttggc
tgtaaagacatgataattccagacaccaaggcggcgcatgtggaaaatgcgagtgagaaa
attaaggagttttctatccaataccaagacgggttgattacaaggagtgagcgctacaac
aaggtagtggatgagtggtctaagtgcacagacttgattgcccgggacatgatgaaagca
atctctttgtccgatgaggaagggaagctgaattccatttatatgatggcgaattccggt
gccaggggttccgcatctcagatgaagcagctggccggcatgcgtgggcttatggccaag
ccctcgggcgaaattatcgaaacccctatcatctcgaacttccgtgaggggttgagcgtg
tttgagtattttaattctacacacggggcgcgcaaggggctggctgacaccgcattgaaa
accgcaaactccggatacctgacccgtaggcttgtggacgtggcgcaagactgtacagtt
gttgagtatgactgtaaaaccaaggatggcgttgtcgctagggcggtgattgagggtggt
gccgtcgtggcgacgcttgacagtgtagtgctaggtagggttgctgcagtcgacacttac
aaccctgtgactgaggaattgctattaagtgctggtgagctgatagacgaagggaaggtc
gagaaaataagagttgctgggttagatgcggtgagagtgcggtccccgctgacatgtgaa
tccaagaaagggatttgctcgttgtgctatggtagagaccttgctgttggggatttggta
tcgataggtgaggctgttggtgtaatagctgcgcagtctgtgggtgagcctggtacacag
ctgaccatgcgtacgttccacgttggtggtaccgcaatgcgcggggtggaggtatctaac
cttatagctgtgctggatgccgaggtgaaattggtgaacagcaacgtggtgaccgacaag
tacggcaatcagatagtgatgagtcggtcatgtgaggtagtgcttctcgacagcgttggt
aatgaaaagatgcggcacagcgtaccatacggtgcgaagctctatgtttcagatgggcag
ccggtcaaaatgatggacaaaatggccgagtgggacccatacactatacccattattacc
gagaagacgggaaccataaagtatgttgacctcatctacggtgtgtccatcaacgaagtt
ttggatgagtctacaggtatatcaaacagggttgttatagactggaagttgcatctccag
ggggcgaacttgaggccgaggttggtgctgttggatgaagatggcaacattgctacctta
tacaatgatctggaggcgagttacttcgtgcctataggcgcggtgctgaacgtccaagat
gggcagaaagtgcacgcgggggacgtcataactaggattcctagagaatccatcaagacc
agagacattaccggggggctgcccagagttattgagctatttgaggcgcgccgtcccaag
gaacacgctattgtaagcgacgttgacggctacgttgagtttggcaaggattactatcgc
tccaagcgccggatattcatacggcctgtagacaaaagccttcctgcggtagaatatttg
gtgcccaagggtaagcacaccatagtgaacgagggtgactttgtgcacaagggtgatctg
ctcatggatggggatccggaccagcatgacatactcagagttttgggggcggaggctctg
gccagctacatgatttctgaaatacaacaggtatacaggctgcaaggtgttaggatagac
aacaagcacatcgaggttatcctcaggcagatgctgcaaaaggtggaaatcactgatccg
ggtgacacaatgtacctggtgggtgagcatgctgggcgcgaggaggttatgcgactcaac
cgcaaactggaagaagctgggaagaagcctgttgcatatgtgccgattctccagggtatt
accaaagcaagtcttgataccaactctttcatttctgcggcgtcgttccaggaaaccacc
aaggtcctgaccgaagccgccttttcaggtaaggaagatcctctgtacggattgaaggag
aatgtaatcgttggtaggctaatacctgcgggtacagggttcattatgaacaaagtgaaa
aagctggcaatgctcgatcaaagcgactatgcaacttactataatagcgaattgcgagag
atcatgggtgacctgggtgacgaattaattgcggaaggtgaggcagcctccccgggccgc
agcggtgatggctatctggggaatggcgggggagttgtagattactag
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