Alteromonas mediterranea DE1: amad1_00955
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Entry
amad1_00955 CDS
T02340
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
amad1_00955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaa03019
]
amad1_00955
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_00955
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
amad1_00955
Messenger RNA biogenesis [BR:
amaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
amad1_00955
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
amad1_00955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
PB4_spike
Motif
Other DBs
NCBI-ProteinID:
AFV83723
LinkDB
All DBs
Position
complement(212819..214660)
Genome browser
AA seq
613 aa
AA seq
DB search
MTTAIAPSESSSNTQSAKTPERILKDVFGYDAFRDGQGEVIHRVCEGKDALVLLPTGGGK
SLCYQIPALVRSGTAIVVSPLISLMQDQVEQLKALGVKAAYLNSTLEADEQAGINDALQA
GKLDLLYVSPERLMQYYFQQSLANADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADTATQADILTQLNLHAPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDSDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGDVDVQLAVPRLEFKPDKKKAKQAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTMLDVSGVGQTKLERYGEA
FIQLIDDYINREH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcaattgctccatctgaatcaagctccaacacgcaaagtgcaaaaacacca
gaacgcattttaaaagatgtcttcggttacgacgcttttcgcgacggtcagggcgaagtc
attcaccgtgtatgtgaaggtaaagacgcactcgtgctgctgcctactggtggcggtaaa
tcgctgtgttatcaaattcctgcgctggtgcgaagtgggacagccattgttgtgtcgccg
cttatatcattgatgcaagaccaggtggagcagctgaaggccttaggtgtaaaagcagct
tacctaaactcgacgttagaagccgatgagcaagcgggtattaacgacgccttgcaggca
ggaaagctagacctgctttatgtgtcacctgagcgtttgatgcagtactattttcagcag
tcgcttgccaatgccgatattgcgctttttgctatcgatgaggcgcactgtgtgtctcat
tgggggcacgactttaggcaagactatcgcgcccttggccaaattaaatctcgctttccc
tctattcccgtaattggactaaccgccaccgcagatacggcaacgcaagctgacatactc
acccagcttaacttgcacgcccctttggtttacaaaggtagtttcgatagacccaacata
cgctatcgggtgatgagcaagtacaaggcattcgaccaagttgttgcttatgttaagcag
caggaaggcagtggtattatttactgcaacagccgggcaaaagtagacgaccttcacgcg
aagctattcaaacaaggctttcgatgtgcggcctatcacgcagggatggatagcgacgag
agagaacttgttcagcgccagtttctcaacgacaaaatcgatattgttgtggccacggtg
gccttcggcatgggcattaacaaatctaacgtgcgctatgtggtgcatcacgatgtgccg
cgaagcgtagaaagctactaccaagaaacgggccgcgctgggcgagacggtttggaatct
gaagccctattattgtttgatgaaaaagacgctgcccgtgtaaagcagtggatagaacaa
ggtgagattgccgagcgcaaccaaatagaattgcagaagtttgcagcaatggaagctttc
tctgaagcccaaacctgccgtaggcaagtcttgctcaactacttttctcagtttagtgac
agcgcctgtggcaattgtgatatttgcctagacccgccaaagatgatcgacggtttggtt
atcgctcaaaaagtactgtcttgtgtactgcggctttcgcagcaggcgtcaagccaatac
gtcatcgatgtgctgcgcggaaagcagcttaggcgacttcaagaagccgggcaccaccaa
ctttctacctacggtataggtaaagataaatcagatagttattggcacaacattatcaat
cagcttgtgcacaaaggccttattcgtgtagatattaccgctcatgcggccttgcggtta
acagaagcggcccgcccagttcttaaaggcgatgtggacgttcagcttgctgtaccgcga
cttgagtttaaaccggataagaaaaaagcgaagcaagcgcctgccaactacgacagaacc
ttatttactcgtcttaagcacttacgcaaagtgttggcagaagagaatgaggtgccgccc
tacgtggtatttagtgacgcaaccttagttgatatggcgtgcaaactgcctaccacgcgc
aacactatgctagatgtgagcggtgtaggccaaaccaagctagagcgctacggcgaggcc
tttatccaacttatcgacgattatatcaaccgcgagcactag
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