Alteromonas mediterranea DE1: amad1_02585
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Entry
amad1_02585 CDS
T02340
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
amad1_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaa03019
]
amad1_02585
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
amad1_02585
Messenger RNA biogenesis [BR:
amaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
amad1_02585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFV84047
LinkDB
All DBs
Position
complement(575458..576747)
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AA seq
429 aa
AA seq
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MPTHLTDTHFSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTI
AFLVATFHYLLSKAENADNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYG
GEGYQSQRETLEEGVDIIIGTTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIR
FLFRRMPPAGERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSD
DDKMLLLLTLLEEEWPEKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILE
DFTKGKLDVLVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFA
CEKYALNLPAIEQYIQKAIPVTDYDSSALLDDVTPPKPRRRRTPNNRNSARRGNGRGRGK
PQQRNNRAQ
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaacggcaaggttgtt
gacgcgttagcggcagctaatttttcacattgtacaccaattcaagcacttgcactgcct
cctttattggaaggtcacgacattgcaggtcaggctcaaactggaaccggtaaaaccatt
gcctttttggtggctacatttcactatttgctaagcaaagcagaaaatgcagataacagc
aaatcaaatggcccacgcgctattattatggcgccaaccagagaactcgccgttcaaatt
tacaacgacgccaaactgctcagtgagcataccggattgtcgcttggtttgatttatggg
ggcgaaggataccaaagtcaacgtgaaactttggaagaaggggtggatattataattggt
acgacggggcgcattctggactattacaaacagaacgtgtttagcctgaaaaacattcag
gttgccgtacttgatgaagctgatcgtatgttcgacttaggctttattaaagatatccgt
tttttattccgccgtatgccacctgccggtgagcgtttgagcatgttgttctctgcaacc
ctgagctatcgcgttcaggaactggcctatgagcacatgaataatccaacccacgttcag
gtagcccccgagcaaacaactgccacacgcgtttctcaggagctcttctatccgtctgat
gatgacaagatgctgctgcttcttacgctacttgaagaagagtggcctgaaaaagccatc
gtcttcgccaataccaagcacagctgtgagaaagtcactgattggttaaccgcagacggc
catcgcgttggcttactaagtggcgatgtaccacaaaagaaacgccttggaattttagaa
gacttcaccaaaggtaagttagatgttctggtagcgacagacgttgctgctagaggtcta
cacattgatgcggtgacacacgtgttcaattatgacctacccgatgatgcggaagactac
gtgcatcgtattggtcgtactggtcgtgccggacaaagtggtattgcaattagttttgct
tgcgaaaaatacgcactaaacttacctgctattgagcaatacattcaaaaagccattcct
gtcaccgattatgacagcagcgcgcttcttgatgatgtaacgcctcctaaaccacgtaga
agacgtacgcctaacaatcgcaatagcgcgcgccgtggtaacggtagagggcgtggtaag
ccccagcaacgcaacaacagagcacaataa
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